{ "type": "genome", "identifier": "GCF_000521785.1", "organism": "Roseivivax halodurans JCM 10272", "title": "Roseivivax halodurans JCM 10272", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration (SOA)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000521785.1", "bioproject": "PRJNA224116", "biosample": "SAMN02597438", "wgs_master": "JALZ00000000.1", "refseq_category": "reference genome", "taxid": "1449350", "species_taxid": "93683", "organism_name": "Roseivivax halodurans JCM 10272", "infraspecific_name": "strain=JCM 10272", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/01/22", "asm_name": "SOAPdenovo v1.05", "asm_submitter": "The Third Institute of State Oceanic Administration (SOA)", "gbrs_paired_asm": "GCA_000521785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/521/785/GCF_000521785.1_SOAPdenovo_v1.05", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4492810", "genome_size_ungapped": "4492810", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "150", "contig_count": "150", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-04-24", "total_gene_count": "4411", "protein_coding_gene_count": "4225", "non_coding_gene_count": "83", "pubmed_id": "24567080" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-01-22", "dateModified": "2014-01-22", "datePublished": "2014-01-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseivivax halodurans JCM 10272" ], "sample_taxid": [ "1449350" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.239 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4492810", "Number of Sequences": "150", "Longest Sequences (bp)": "506576", "N50 (bp)": "144129", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.3", "Number of CDSs": "4269", "Average Protein Length": "305.6", "Coding Ratio (%)": "87.1", "Number of rRNAs": "3", "Number of tRNAs": "78", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseivivax halodurans", "strain": "strain=JCM 10272", "accession": "GCA_000521785.1", "taxid": 93683, "species_taxid": 93683, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1427, "total_fragments": 1433, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseivivax jejudonensis", "strain": "strain=CECT 8625", "accession": "GCA_900172265.1", "taxid": 1529041, "species_taxid": 1529041, "relation_to_type": "type", "validated": true, "ani": 81.8679, "matched_fragments": 799, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax isoporae", "strain": "strain=LMG 25204", "accession": "GCA_000521865.1", "taxid": 591206, "species_taxid": 591206, "relation_to_type": "type", "validated": true, "ani": 81.7975, "matched_fragments": 816, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax marinus", "strain": "strain=DSM 27511", "accession": "GCA_900109705.1", "taxid": 1379903, "species_taxid": 1379903, "relation_to_type": "type", "validated": true, "ani": 81.7529, "matched_fragments": 782, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax lentus", "strain": "strain=DSM 29430", "accession": "GCA_900156805.1", "taxid": 633194, "species_taxid": 633194, "relation_to_type": "type", "validated": true, "ani": 80.3477, "matched_fragments": 669, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax halotolerans", "strain": "strain=JCM 10271", "accession": "GCA_900115815.1", "taxid": 93684, "species_taxid": 93684, "relation_to_type": "type", "validated": true, "ani": 79.7568, "matched_fragments": 604, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 78.6341, "matched_fragments": 413, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 78.5105, "matched_fragments": 416, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 78.4676, "matched_fragments": 452, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola endophyticus", "strain": "strain=CBS1P-1", "accession": "GCA_018760365.1", "taxid": 2841273, "species_taxid": 2841273, "relation_to_type": "type", "validated": true, "ani": 78.4378, "matched_fragments": 421, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.377, "matched_fragments": 476, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_900112725.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.3518, "matched_fragments": 472, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=B108", "accession": "GCA_001441635.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.3387, "matched_fragments": 475, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": 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