{
    "type": "genome",
    "identifier": "GCF_000521865.1",
    "organism": "Roseivivax isoporae LMG 25204",
    "title": "Roseivivax isoporae LMG 25204",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The Third Institute of State Oceanic Administration (SOA)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000521865.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02641562",
        "wgs_master": "JAME00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1449351",
        "species_taxid": "591206",
        "organism_name": "Roseivivax isoporae LMG 25204",
        "infraspecific_name": "strain=LMG 25204",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/01/23",
        "asm_name": "SOAPdenovo v1.05",
        "asm_submitter": "The Third Institute of State Oceanic Administration (SOA)",
        "gbrs_paired_asm": "GCA_000521865.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/521/865/GCF_000521865.1_SOAPdenovo_v1.05",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4898228",
        "genome_size_ungapped": "4898228",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "203",
        "contig_count": "203",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2023-04-24",
        "total_gene_count": "4811",
        "protein_coding_gene_count": "4682",
        "non_coding_gene_count": "50",
        "pubmed_id": "24567080"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-01-23",
    "dateModified": "2014-01-23",
    "datePublished": "2014-01-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Roseivivax isoporae LMG 25204"
        ],
        "sample_taxid": [
            "1449351"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "missing"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.324 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4898228",
        "Number of Sequences": "203",
        "Longest Sequences (bp)": "241288",
        "N50 (bp)": "105086",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.8",
        "Number of CDSs": "4613",
        "Average Protein Length": "314.0",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Roseivivax isoporae",
                "strain": "strain=LMG 25204",
                "accession": "GCA_000521865.1",
                "taxid": 591206,
                "species_taxid": 591206,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1542,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Roseivivax halodurans",
                "strain": "strain=JCM 10272",
                "accession": "GCA_000521785.1",
                "taxid": 93683,
                "species_taxid": 93683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7757,
                "matched_fragments": 823,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivivax marinus",
                "strain": "strain=DSM 27511",
                "accession": "GCA_900109705.1",
                "taxid": 1379903,
                "species_taxid": 1379903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5949,
                "matched_fragments": 824,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivivax jejudonensis",
                "strain": "strain=CECT 8625",
                "accession": "GCA_900172265.1",
                "taxid": 1529041,
                "species_taxid": 1529041,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5596,
                "matched_fragments": 847,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivivax lentus",
                "strain": "strain=DSM 29430",
                "accession": "GCA_900156805.1",
                "taxid": 633194,
                "species_taxid": 633194,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4728,
                "matched_fragments": 771,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger profundus",
                "strain": "strain=JLT2016",
                "accession": "GCA_001969385.1",
                "taxid": 1229727,
                "species_taxid": 1229727,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2068,
                "matched_fragments": 722,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger profundus",
                "strain": "strain=CGMCC 1.12377",
                "accession": "GCA_014637265.1",
                "taxid": 1229727,
                "species_taxid": 1229727,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1451,
                "matched_fragments": 718,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Yangia pacifica",
                "strain": "strain=DSM 26894",
                "accession": "GCA_900116195.1",
                "taxid": 311180,
                "species_taxid": 311180,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.5458,
                "matched_fragments": 720,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Yangia pacifica",
                "strain": "strain=CGMCC 1.3455",
                "accession": "GCA_900100725.1",
                "taxid": 311180,
                "species_taxid": 311180,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.5252,
                "matched_fragments": 716,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivivax halotolerans",
                "strain": "strain=JCM 10271",
                "accession": "GCA_900115815.1",
                "taxid": 93684,
                "species_taxid": 93684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4302,
                "matched_fragments": 609,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Wenxinia saemankumensis",
                "strain": "strain=DSM 100565",
                "accession": "GCA_900141735.1",
                "taxid": 1447782,
                "species_taxid": 1447782,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.057,
                "matched_fragments": 570,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger pallidus",
                "strain": "strain=CGMCC 1.15762",
                "accession": "GCA_014643635.1",
                "taxid": 1775170,
                "species_taxid": 1775170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0469,
                "matched_fragments": 556,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger marinus",
                "strain": "strain=DSM 26424",
                "accession": "GCA_900100085.1",
                "taxid": 555512,
                "species_taxid": 555512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9569,
                "matched_fragments": 637,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Palleronia sediminis",
                "strain": "strain=SS33",
                "accession": "GCA_004358695.1",
                "taxid": 2547833,
                "species_taxid": 2547833,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5835,
                "matched_fragments": 488,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovulum tesquicola",
                "strain": "strain=A-36s",
                "accession": "GCA_024128855.1",
                "taxid": 540254,
                "species_taxid": 540254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4189,
                "matched_fragments": 492,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseibacterium elongatum",
                "strain": "strain=DFL-43",
                "accession": "GCA_000590925.1",
                "taxid": 159346,
                "species_taxid": 159346,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7878,
                "matched_fragments": 430,
                "total_fragments": 1552,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000521865.1",
                "gtdb_species": "s__Roseivivax isoporae",
                "ani": 100.0,
                "matched_fragments": 1542,
                "total_fragments": 1552,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseivivax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000521785.1",
                "gtdb_species": "s__Roseivivax halodurans",
                "ani": 81.7823,
                "matched_fragments": 823,
                "total_fragments": 1552,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseivivax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900112685.1",
                "gtdb_species": "s__Roseivivax sediminis",
                "ani": 81.7071,
                "matched_fragments": 862,
                "total_fragments": 1552,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseivivax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900109705.1",
                "gtdb_species": "s__Roseivivax marinus",
                "ani": 81.587,
                "matched_fragments": 825,
                "total_fragments": 1552,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseivivax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.84",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900172265.1",
                "gtdb_species": "s__Roseivivax jejudonensis",
                "ani": 81.5805,
                "matched_fragments": 842,
                "total_fragments": 1552,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseivivax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900156805.1",
                "gtdb_species": "s__Roseivivax lentus",
                "ani": 80.48,
                "matched_fragments": 770,
                "total_fragments": 1552,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseivivax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000442255.1",
                "gtdb_species": "s__Salipiger mucosus",
                "ani": 80.4071,
                "matched_fragments": 760,
                "total_fragments": 1552,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Salipiger",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001969385.1",
                "gtdb_species": "s__Salipiger profundus",
                "ani": 80.2142,
                "matched_fragments": 721,
                "total_fragments": 1552,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Salipiger",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.64",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002814095.1",
                "gtdb_species": "s__Sagittula sp002814095",
                "ani": 79.6014,
                "matched_fragments": 685,
                "total_fragments": 1552,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sagittula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012395815.1",
                "gtdb_species": "s__Roseicyclus sp012395815",
                "ani": 79.4572,
                "matched_fragments": 618,
                "total_fragments": 1552,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseicyclus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900141735.1",
                "gtdb_species": "s__Wenxinia saemankumensis",
                "ani": 79.0609,
                "matched_fragments": 569,
                "total_fragments": 1552,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Wenxinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001205715.1",
                "gtdb_species": "s__Pseudaestuariivita atlantica",
                "ani": 78.8559,
                "matched_fragments": 553,
                "total_fragments": 1552,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudaestuariivita",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.071,
        "cell_length": 0.176,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 37.5,
        "optimum_ph": 7.75,
        "genome_size": 4898228.0,
        "gc_content": 69.8,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Roseivivax",
        "isoporae",
        "LMG",
        "25204"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}