{ "type": "genome", "identifier": "GCF_000525835.1", "organism": "Listeria grandensis FSL F6-0971", "title": "Listeria grandensis FSL F6-0971", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Cornell University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000525835.1", "bioproject": "PRJNA224116", "biosample": "SAMN02671247", "wgs_master": "AODD00000000.1", "refseq_category": "na", "taxid": "1265819", "species_taxid": "1494963", "organism_name": "Listeria grandensis FSL F6-0971", "infraspecific_name": "strain=FSL F6-0971", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/01/31", "asm_name": "Listeriaceaebacterium FSL F6-971", "asm_submitter": "Cornell University", "gbrs_paired_asm": "GCA_000525835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/525/835/GCF_000525835.1_Listeriaceaebacterium_FSL_F6-971", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3181727", "genome_size_ungapped": "3181727", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "62", "contig_count": "62", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000525835.1-RS_2024_04_02", "annotation_date": "2024-04-02", "total_gene_count": "3165", "protein_coding_gene_count": "2850", "non_coding_gene_count": "80", "pubmed_id": "24599893" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-01-31", "dateModified": "2014-01-31", "datePublished": "2014-01-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Listeria grandensis FSL F6-0971" ], "sample_taxid": [ "1265819" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Colorado" ], "sample_host_location_id": [], "data_size": "0.907 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3181727", "Number of Sequences": "62", "Longest Sequences (bp)": "670255", "N50 (bp)": "126439", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.0", "Number of CDSs": "3210", "Average Protein Length": "281.0", "Coding Ratio (%)": "85.0", "Number of rRNAs": "5", "Number of tRNAs": "62", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Listeria grandensis", "strain": "strain=FSL F6-0971", "accession": "GCA_000525835.1", "taxid": 1494963, 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"ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000525835.1", "gtdb_species": "s__Listeria_A grandensis", "ani": 100.0, "matched_fragments": 1030, "total_fragments": 1031, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.47", "min_intra_species_ani": "97.36", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_000525855.1", "gtdb_species": "s__Listeria_A cornellensis", "ani": 85.3105, "matched_fragments": 753, "total_fragments": 1031, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014322795.1", "gtdb_species": "s__Listeria_A portnoyi", "ani": 84.5496, "matched_fragments": 717, "total_fragments": 1031, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003534205.1", "gtdb_species": "s__Listeria_A weihenstephanensis", "ani": 83.2808, "matched_fragments": 700, "total_fragments": 1031, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "98.05", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { 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