{ "type": "genome", "identifier": "GCF_000526155.1", "organism": "Deferrisoma camini S3R1", "title": "Deferrisoma camini S3R1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000526155.1", "bioproject": "PRJNA224116", "biosample": "SAMN02584914", "wgs_master": "JAFN00000000.1", "refseq_category": "reference genome", "taxid": "1125863", "species_taxid": "1035120", "organism_name": "Deferrisoma camini S3R1", "infraspecific_name": "strain=S3R1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/01/14", "asm_name": "ASM52615v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000526155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/526/155/GCF_000526155.1_ASM52615v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4236551", "genome_size_ungapped": "4236551", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000526155.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3779", "protein_coding_gene_count": "3692", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-01-14", "dateModified": "2014-01-14", "datePublished": "2014-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Deferrisoma camini S3R1" ], "sample_taxid": [ "1125863" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.140 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4236551", "Number of Sequences": "1", "Longest Sequences (bp)": "4236551", "N50 (bp)": "4236551", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.1", "Number of CDSs": "3783", "Average Protein Length": "330.3", "Coding Ratio (%)": "88.5", "Number of rRNAs": "6", "Number of tRNAs": "61", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deferrisoma camini", "strain": "strain=S3R1", "accession": "GCA_000526155.1", "taxid": 1035120, "species_taxid": 1035120, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1411, "total_fragments": 1412, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Desulfuromonas versatilis", "strain": "strain=NIT-T3", "accession": "GCA_019704135.1", "taxid": 2802975, "species_taxid": 2802975, "relation_to_type": "type", "validated": true, "ani": 76.4058, "matched_fragments": 113, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter pickeringii", "strain": "strain=G13", "accession": "GCA_000817955.1", "taxid": 345632, "species_taxid": 345632, "relation_to_type": "type", "validated": true, "ani": 76.1326, "matched_fragments": 82, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter ruishenii", "strain": "strain=CGMCC 1.10136", "accession": "GCA_007830115.1", "taxid": 686800, "species_taxid": 686800, "relation_to_type": "type", "validated": true, "ani": 75.9315, "matched_fragments": 53, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas paludis", "strain": "strain=Red736", "accession": "GCA_014193585.1", "taxid": 2740185, "species_taxid": 2740185, "relation_to_type": "type", "validated": true, "ani": 75.8742, "matched_fragments": 86, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfacinum infernum", "strain": "strain=DSM 9756", "accession": "GCA_900129305.1", "taxid": 35837, "species_taxid": 35837, "relation_to_type": "type", "validated": true, "ani": 75.8369, "matched_fragments": 105, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dissulfurirhabdus thermomarina", "strain": "strain=DSM 100025", "accession": "GCA_010499435.1", "taxid": 1765737, "species_taxid": 1765737, "relation_to_type": "type", "validated": true, "ani": 75.8244, "matched_fragments": 135, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dissulfurirhabdus thermomarina", "strain": "strain=SH388", "accession": "GCA_012979235.1", "taxid": 1765737, "species_taxid": 1765737, "relation_to_type": "type", "validated": true, "ani": 75.7766, "matched_fragments": 146, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas anaerohicana", "strain": "strain=Red421", "accession": "GCA_016458305.1", "taxid": 2798583, "species_taxid": 2798583, "relation_to_type": "type", "validated": true, "ani": 75.7436, "matched_fragments": 84, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 75.6635, "matched_fragments": 131, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas broegbernensis", "strain": "strain=DSM 12573", "accession": "GCA_014202435.1", "taxid": 83619, "species_taxid": 83619, "relation_to_type": "type", "validated": true, "ani": 75.6174, "matched_fragments": 89, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas broegbernensis", "strain": "strain=DSM 12573", "accession": "GCA_010093165.1", "taxid": 83619, "species_taxid": 83619, "relation_to_type": "type", "validated": true, "ani": 75.6046, "matched_fragments": 90, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas wenzhouensis", "strain": "strain=YD-1", "accession": "GCA_007859305.1", "taxid": 2599615, "species_taxid": 2599615, "relation_to_type": "type", "validated": true, "ani": 75.532, "matched_fragments": 94, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas jiangsuensis", "strain": "strain=DSM 22398", "accession": "GCA_010093185.1", "taxid": 619688, "species_taxid": 619688, "relation_to_type": "type", "validated": true, "ani": 75.5308, "matched_fragments": 90, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": true, "ani": 75.4541, "matched_fragments": 141, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermaerobacter marianensis", "strain": "strain=DSM 12885", "accession": "GCA_000184705.1", "taxid": 73919, "species_taxid": 73919, "relation_to_type": "type", "validated": true, "ani": 75.4295, "matched_fragments": 129, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorhodospira halophila", "strain": "strain=SL1", "accession": "GCA_000015585.1", "taxid": 1053, "species_taxid": 1053, "relation_to_type": "suspected-type", "validated": true, "ani": 75.3935, "matched_fragments": 78, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis", "strain": "strain=AM401", "accession": "GCA_006636215.1", "taxid": 2590453, "species_taxid": 2590453, "relation_to_type": "type", "validated": true, "ani": 75.1428, "matched_fragments": 110, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus koreensis", "strain": "strain=SJW1-2", "accession": "GCA_002901445.1", "taxid": 2054903, "species_taxid": 2054903, "relation_to_type": "type", "validated": true, "ani": 75.1247, "matched_fragments": 63, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus eversor", "strain": "strain=AB053B", "accession": "GCA_010894455.1", "taxid": 2709661, "species_taxid": 2709661, "relation_to_type": "type", "validated": true, "ani": 75.1066, "matched_fragments": 129, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobaculum fulvum", "strain": "strain=KCTC 42651", "accession": "GCA_014652915.1", "taxid": 1633335, "species_taxid": 1633335, "relation_to_type": "type", "validated": true, "ani": 75.0916, "matched_fragments": 137, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus fulvus", "strain": "strain=DSM 16525", "accession": "GCA_900111765.1", "taxid": 33, "species_taxid": 33, "relation_to_type": "type", "validated": true, "ani": 75.0252, "matched_fragments": 132, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus apachensis", "strain": "strain=DSM 19763", "accession": "GCA_000381345.1", "taxid": 309886, "species_taxid": 309886, "relation_to_type": "type", "validated": true, "ani": 74.9176, "matched_fragments": 61, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus aerius", "strain": "strain=TR0125", "accession": "GCA_002897375.1", "taxid": 200253, "species_taxid": 200253, "relation_to_type": "type", "validated": true, "ani": 74.8085, "matched_fragments": 69, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000526155.1", "gtdb_species": "s__Deferrisoma camini", "ani": 100.0, "matched_fragments": 1411, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_C;c__Deferrisomatia;o__Deferrisomatales;f__Deferrisomataceae;g__Deferrisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_013152215.1", "gtdb_species": "s__Deferrisoma sp013152215", "ani": 93.0549, "matched_fragments": 762, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_C;c__Deferrisomatia;o__Deferrisomatales;f__Deferrisomataceae;g__Deferrisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016214985.1", "gtdb_species": "s__JACRMM01 sp016214985", "ani": 77.5836, "matched_fragments": 343, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_C;c__Deferrisomatia;o__Deferrisomatales;f__JACRMM01;g__JACRMM01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002011835.1", "gtdb_species": "s__JdFR-95 sp002011835", "ani": 76.3299, "matched_fragments": 151, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfarculia;o__Desulfarculales;f__Desulfarculaceae;g__JdFR-95", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012979235.1", "gtdb_species": "s__Dissulfurirhabdus thermomarina", "ani": 75.8211, "matched_fragments": 141, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Dissulfuribacteria;o__Dissulfuribacterales;f__Dissulfurirhabdaceae;g__Dissulfurirhabdus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_015709205.1", "gtdb_species": "s__JACCQO01 sp015709205", "ani": 75.6775, "matched_fragments": 143, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__JACCQO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003576805.1", "gtdb_species": "s__PR03 sp003576805", "ani": 75.555, "matched_fragments": 91, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA9160;o__UBA9160;f__PR03;g__PR03", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016214955.1", "gtdb_species": "s__JACRMN01 sp016214955", "ani": 75.5475, "matched_fragments": 225, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__JACRMN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018812395.1", "gtdb_species": "s__JAHJDS01 sp018812395", "ani": 75.5434, "matched_fragments": 141, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfarculia;o__Desulfarculales;f__JAHJDS01;g__JAHJDS01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016208235.1", "gtdb_species": "s__SURF-52 sp016208235", "ani": 75.4985, "matched_fragments": 57, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__0-14-0-80-60-11;g__SURF-52", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "98.97", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003337735.1", "gtdb_species": "s__Thioalbus denitrificans", "ani": 75.4464, "matched_fragments": 142, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__DSM-26407;f__DSM-26407;g__Thioalbus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000184705.1", "gtdb_species": "s__Thermaerobacter marianensis", "ani": 75.426, "matched_fragments": 127, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_E;c__Thermaerobacteria;o__Thermaerobacterales;f__Thermaerobacteraceae;g__Thermaerobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002452635.1", "gtdb_species": "s__UBA6814 sp002452635", "ani": 75.4073, "matched_fragments": 182, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__UBA6814", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018829095.1", "gtdb_species": "s__JAHJUF01 sp018829095", "ani": 75.3875, "matched_fragments": 93, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfatibacillaceae;g__JAHJUF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015494165.1", "gtdb_species": "s__S144-34 sp015494165", "ani": 75.3387, "matched_fragments": 77, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__S144-34;f__S144-34;g__S144-34", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003586305.1", "gtdb_species": "s__Lysobacter tabacisoli", "ani": 75.2595, "matched_fragments": 60, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002159175.1", "gtdb_species": "s__An92 sp002159175", "ani": 75.0262, "matched_fragments": 68, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__An92", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.91", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002901445.1", "gtdb_species": "s__Deinococcus koreensis", "ani": 75.0222, "matched_fragments": 62, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000381345.1", "gtdb_species": "s__Deinococcus apachensis", "ani": 74.9401, "matched_fragments": 58, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002897375.1", "gtdb_species": "s__Deinococcus aerius", "ani": 74.8147, "matched_fragments": 68, "total_fragments": 1412, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Deferrisoma", "camini", "S3R1" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }