{ "type": "genome", "identifier": "GCF_000526715.1", "organism": "Hydrogenovibrio kuenenii DSM 12350", "title": "Hydrogenovibrio kuenenii DSM 12350", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000526715.1", "bioproject": "PRJNA224116", "biosample": "SAMN02584989", "wgs_master": "JAGP00000000.1", "refseq_category": "reference genome", "taxid": "1168067", "species_taxid": "63658", "organism_name": "Hydrogenovibrio kuenenii DSM 12350", "infraspecific_name": "strain=DSM 12350", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/01/14", "asm_name": "ASM52671v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000526715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/526/715/GCF_000526715.1_ASM52671v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2452457", "genome_size_ungapped": "2452457", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000526715.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2285", "protein_coding_gene_count": "2226", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-01-14", "dateModified": "2014-01-14", "datePublished": "2014-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Hydrogenovibrio kuenenii DSM 12350" ], "sample_taxid": [ "1168067" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.692 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2452457", "Number of Sequences": "2", "Longest Sequences (bp)": "2449025", "N50 (bp)": "2449025", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.5", "Number of CDSs": "2230", "Average Protein Length": "330.9", "Coding Ratio (%)": "90.3", "Number of rRNAs": "9", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hydrogenovibrio kuenenii", "strain": "strain=DSM 12350", "accession": "GCA_000526715.1", "taxid": 63658, "species_taxid": 63658, 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"organism_name": "Thiomicrorhabdus heinhorstiae", "strain": "strain=HH1", "accession": "GCA_013391765.2", "taxid": 2748010, "species_taxid": 2748010, "relation_to_type": "type", "validated": true, "ani": 77.9131, "matched_fragments": 73, "total_fragments": 817, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000526715.1", "gtdb_species": "s__Hydrogenovibrio kuenenii", "ani": 100.0, "matched_fragments": 815, "total_fragments": 817, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Hydrogenovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009296185.1", "gtdb_species": "s__Hydrogenovibrio 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