{
    "type": "genome",
    "identifier": "GCF_000526875.1",
    "organism": "Leptospira licerasiae ATCC BAA-1110",
    "title": "Leptospira licerasiae ATCC BAA-1110",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000526875.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02585001",
        "wgs_master": "JAGX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1408446",
        "species_taxid": "447106",
        "organism_name": "Leptospira licerasiae ATCC BAA-1110",
        "infraspecific_name": "strain=ATCC BAA-1110",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/01/14",
        "asm_name": "ASM52687v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000526875.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/526/875/GCF_000526875.1_ASM52687v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4209996",
        "genome_size_ungapped": "4209996",
        "gc_percent": "41.000000",
        "replicon_count": "0",
        "scaffold_count": "25",
        "contig_count": "25",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000526875.1-RS_2024_04_26",
        "annotation_date": "2024-04-26",
        "total_gene_count": "3894",
        "protein_coding_gene_count": "3826",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-01-14",
    "dateModified": "2014-01-14",
    "datePublished": "2014-01-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leptospira licerasiae ATCC BAA-1110"
        ],
        "sample_taxid": [
            "1408446"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.190 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4209996",
        "Number of Sequences": "25",
        "Longest Sequences (bp)": "970389",
        "N50 (bp)": "584222",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.1",
        "Number of CDSs": "3822",
        "Average Protein Length": "330.0",
        "Coding Ratio (%)": "89.9",
        "Number of rRNAs": "4",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Leptospira licerasiae",
                "strain": "strain=ATCC BAA-1110",
                "accession": "GCA_000526875.1",
                "taxid": 447106,
                "species_taxid": 447106,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1389,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leptospira licerasiae",
                "strain": "strain=VAR 010",
                "accession": "GCA_000244755.3",
                "taxid": 447106,
                "species_taxid": 447106,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9941,
                "matched_fragments": 1385,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leptospira hartskeerlii",
                "strain": "strain=MCA2-B-A3",
                "accession": "GCA_002811475.1",
                "taxid": 2023177,
                "species_taxid": 2023177,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0649,
                "matched_fragments": 1208,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira selangorensis",
                "strain": "strain=SSW17",
                "accession": "GCA_004769405.1",
                "taxid": 2484982,
                "species_taxid": 2484982,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.5185,
                "matched_fragments": 1203,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira saintgironsiae",
                "strain": "strain=FH4-C-A2",
                "accession": "GCA_002811765.1",
                "taxid": 2023183,
                "species_taxid": 2023183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1305,
                "matched_fragments": 1190,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira haakeii",
                "strain": "strain=ATI7-C-A4",
                "accession": "GCA_002812045.1",
                "taxid": 2023198,
                "species_taxid": 2023198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.054,
                "matched_fragments": 1207,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira johnsonii",
                "strain": "strain=E8",
                "accession": "GCA_003112675.1",
                "taxid": 1917820,
                "species_taxid": 1917820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.047,
                "matched_fragments": 1189,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira venezuelensis",
                "strain": "strain=CLM-U50",
                "accession": "GCA_002150035.1",
                "taxid": 1958811,
                "species_taxid": 1958811,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8031,
                "matched_fragments": 1226,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira neocaledonica",
                "strain": "strain=ES4-C-A1",
                "accession": "GCA_002812205.1",
                "taxid": 2023192,
                "species_taxid": 2023192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5766,
                "matched_fragments": 1197,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000244755.1",
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                "matched_fragments": 1385,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.34",
                "min_intra_species_ani": "97.39",
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                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCF_002811475.1",
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                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
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                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004770895.1",
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                "matched_fragments": 1235,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004769405.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.97",
                "min_intra_species_ani": "97.97",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_004770105.1",
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                "matched_fragments": 1196,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_002812045.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_B",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
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            },
            {
                "accession": "GCF_003112675.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "matched_fragments": 1225,
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.8,
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        "doubling_h": 1.009,
        "growth_tmp": 29.846,
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        "coding_genes": 3721.42,
        "rRNA16S_genes": 2.0,
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        "bacillus_cell_shape": 0.1,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "licerasiae",
        "ATCC",
        "BAA-1110"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}