{ "type": "genome", "identifier": "GCF_000564855.1", "organism": "Actinokineospora spheciospongiae", "title": "Actinokineospora spheciospongiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Wuerzburg", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000564855.1", "bioproject": "PRJNA224116", "biosample": "SAMN02382011", "wgs_master": "AYXG00000000.1", "refseq_category": "na", "taxid": "909613", "species_taxid": "909613", "organism_name": "Actinokineospora spheciospongiae", "infraspecific_name": "strain=EG49", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/02/06", "asm_name": "ActEG49", "asm_submitter": "University of Wuerzburg", "gbrs_paired_asm": "GCA_000564855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/564/855/GCF_000564855.1_ActEG49", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7529476", "genome_size_ungapped": "7529476", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "263", "contig_count": "263", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-16", "total_gene_count": "6658", "protein_coding_gene_count": "6501", "non_coding_gene_count": "57", "pubmed_id": "24604655" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-02-06", "dateModified": "2014-02-06", "datePublished": "2014-02-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinokineospora spheciospongiae" ], "sample_taxid": [ "909613" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Egypt: Red Sea, Ras Mohamed, Sinai" ], "sample_host_location_id": [], "data_size": "2.000 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7529476", "Number of Sequences": "263", "Longest Sequences (bp)": "224767", "N50 (bp)": "52481", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.8", "Number of CDSs": "6639", "Average Protein Length": "330.7", "Coding Ratio (%)": "87.5", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinokineospora spheciospongiae", "strain": "strain=EG49", "accession": "GCA_000564855.1", "taxid": 909613, "species_taxid": 909613, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2363, "total_fragments": 2383, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinokineospora pegani", "strain": "strain=TRM 65233", "accession": "GCA_009745975.1", "taxid": 2654637, "species_taxid": 2654637, "relation_to_type": "type", "validated": true, "ani": 84.4952, "matched_fragments": 1446, "total_fragments": 2383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora bangkokensis", "strain": "strain=44EHW", "accession": "GCA_001940455.1", "taxid": 1193682, "species_taxid": 1193682, "relation_to_type": "type", "validated": true, "ani": 84.1413, "matched_fragments": 1500, "total_fragments": 2383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora iranica", "strain": "strain=IBRC-M 10403", "accession": "GCA_900101685.1", "taxid": 1271860, "species_taxid": 1271860, "relation_to_type": "type", "validated": true, "ani": 82.1683, "matched_fragments": 1227, "total_fragments": 2383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora terrae", "strain": "strain=DSM 44260", "accession": "GCA_900111175.1", "taxid": 155974, "species_taxid": 155974, "relation_to_type": "type", "validated": true, "ani": 81.8326, "matched_fragments": 1201, "total_fragments": 2383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 81.7021, "matched_fragments": 1229, "total_fragments": 2383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora cianjurensis", "strain": "strain=DSM 45657", "accession": "GCA_003663795.1", "taxid": 585224, "species_taxid": 585224, "relation_to_type": "type", "validated": true, "ani": 81.6637, "matched_fragments": 1188, "total_fragments": 2383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora diospyrosa", "strain": "strain=DSM 44255", "accession": "GCA_024171925.1", "taxid": 103728, "species_taxid": 103728, "relation_to_type": "type", "validated": true, "ani": 81.5783, "matched_fragments": 1168, "total_fragments": 2383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora baliensis", "strain": "strain=DSM 45656", "accession": "GCA_016907695.1", "taxid": 547056, "species_taxid": 547056, "relation_to_type": "type", "validated": true, "ani": 81.4846, "matched_fragments": 1182, "total_fragments": 2383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora auranticolor", "strain": "strain=YU 961-1", "accession": "GCA_002934265.1", "taxid": 155976, "species_taxid": 155976, "relation_to_type": "type", "validated": true, "ani": 81.4172, "matched_fragments": 1255, "total_fragments": 2383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora enzanensis", "strain": "strain=DSM 44649", "accession": "GCA_000374445.1", "taxid": 155975, "species_taxid": 155975, "relation_to_type": "type", "validated": true, "ani": 81.4018, "matched_fragments": 1148, "total_fragments": 2383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora inagensis", "strain": "strain=DSM 44258", "accession": "GCA_000482865.1", "taxid": 103730, "species_taxid": 103730, "relation_to_type": "type", "validated": true, "ani": 81.3152, "matched_fragments": 1091, "total_fragments": 2383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora fastidiosa", "strain": "strain=JCM 3276", "accession": "GCA_014648415.1", "taxid": 1816, "species_taxid": 1816, "relation_to_type": "type", "validated": true, "ani": 81.1229, "matched_fragments": 1183, "total_fragments": 2383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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96748", "accession": "GCA_018885265.1", "taxid": 2842453, "species_taxid": 2842453, "relation_to_type": "type", "validated": true, "ani": 78.0648, "matched_fragments": 847, "total_fragments": 2383, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 78.0584, "matched_fragments": 1009, "total_fragments": 2383, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003182415.1", "gtdb_species": "s__Actinokineospora mzabensis", "ani": 98.9619, "matched_fragments": 2273, "total_fragments": 2383, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinokineospora", "ani_circumscription_radius": 95.0, 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