{
    "type": "genome",
    "identifier": "GCF_000566685.1",
    "organism": "Dyadobacter tibetensis Y620-1",
    "title": "Dyadobacter tibetensis Y620-1",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Urban Environment",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000566685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02951879",
        "wgs_master": "AZQN00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1434325",
        "species_taxid": "1211851",
        "organism_name": "Dyadobacter tibetensis Y620-1",
        "infraspecific_name": "strain=Y620-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/01/30",
        "asm_name": "Dyadobacter tibetensis Y620-1",
        "asm_submitter": "Institute of Urban Environment",
        "gbrs_paired_asm": "GCA_000566685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/566/685/GCF_000566685.1_Dyadobacter_tibetensis_Y620-1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5313422",
        "genome_size_ungapped": "5313422",
        "gc_percent": "43.500000",
        "replicon_count": "0",
        "scaffold_count": "33",
        "contig_count": "33",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000566685.1-RS_2024_09_16",
        "annotation_date": "2024-09-16",
        "total_gene_count": "4198",
        "protein_coding_gene_count": "4143",
        "non_coding_gene_count": "41",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-01-30",
    "dateModified": "2014-01-30",
    "datePublished": "2014-01-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dyadobacter tibetensis Y620-1"
        ],
        "sample_taxid": [
            "1434325"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Tibet"
        ],
        "sample_host_location_id": [],
        "data_size": "1.518 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5313422",
        "Number of Sequences": "33",
        "Longest Sequences (bp)": "1240627",
        "N50 (bp)": "797100",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.4",
        "Number of CDSs": "4126",
        "Average Protein Length": "372.9",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Dyadobacter tibetensis",
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                "accession": "GCA_000566685.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1759,
                "total_fragments": 1760,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Dyadobacter jejuensis",
                "strain": "strain=DSM 100346",
                "accession": "GCA_003149085.1",
                "taxid": 1082580,
                "species_taxid": 1082580,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5035,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyadobacter frigoris",
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                "accession": "GCA_005280585.1",
                "taxid": 2576211,
                "species_taxid": 2576211,
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                "validated": true,
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                "matched_fragments": 126,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Dyadobacter psychrophilus",
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                "accession": "GCA_900167945.1",
                "taxid": 651661,
                "species_taxid": 651661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3572,
                "matched_fragments": 124,
                "total_fragments": 1760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyadobacter flavalbus",
                "strain": "strain=NS28",
                "accession": "GCA_006149045.1",
                "taxid": 2579942,
                "species_taxid": 2579942,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2687,
                "matched_fragments": 132,
                "total_fragments": 1760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyadobacter beijingensis",
                "strain": "strain=DSM 21582",
                "accession": "GCA_000382205.1",
                "taxid": 365489,
                "species_taxid": 365489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9741,
                "matched_fragments": 125,
                "total_fragments": 1760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyadobacter beijingensis",
                "strain": "strain=CGMCC 1.6375",
                "accession": "GCA_014645155.1",
                "taxid": 365489,
                "species_taxid": 365489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9495,
                "matched_fragments": 123,
                "total_fragments": 1760,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_000566685.1",
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                "matched_fragments": 1759,
                "total_fragments": 1760,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_003149085.1",
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                "matched_fragments": 439,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009801115.1",
                "gtdb_species": "s__Dyadobacter sp009801115",
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                "matched_fragments": 126,
                "total_fragments": 1760,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005280585.1",
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                "total_fragments": 1760,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900167945.1",
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            },
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000382205.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter",
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                "mean_intra_species_ani": "100.00",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_009296315.1",
                "gtdb_species": "s__Persicitalea sp009296315",
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                "matched_fragments": 54,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Persicitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.176,
        "doubling_h": null,
        "growth_tmp": 26.833,
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        "gc_content": 49.766,
        "coding_genes": 5709.667,
        "rRNA16S_genes": 4.0,
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        "gram_stain": 0.0,
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        "range_salinity": null,
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        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Dyadobacter",
        "tibetensis",
        "Y620-1"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}