{ "type": "genome", "identifier": "GCF_000582515.1", "organism": "Yersinia similis", "title": "Yersinia similis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Friedrich-Loeffler-Institut", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000582515.1", "bioproject": "PRJNA224116", "biosample": "SAMN02640350", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "367190", "species_taxid": "367190", "organism_name": "Yersinia similis", "infraspecific_name": "strain=Y_sim_228", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/02/26", "asm_name": "ASM58251v1", "asm_submitter": "Friedrich-Loeffler-Institut", "gbrs_paired_asm": "GCA_000582515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/582/515/GCF_000582515.1_ASM58251v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4964409", "genome_size_ungapped": "4964409", "gc_percent": "47.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000582515.1-RS_2024_11_13", "annotation_date": "2024-11-13", "total_gene_count": "4540", "protein_coding_gene_count": "4209", "non_coding_gene_count": "118", "pubmed_id": "24675860" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-02-26", "dateModified": "2014-02-26", "datePublished": "2014-02-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Yersinia similis" ], "sample_taxid": [ "367190" ], "sample_host_organism": [ "rabbit" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Hamburg" ], "sample_host_location_id": [], "data_size": "1.405 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4964409", "Number of Sequences": "2", "Longest Sequences (bp)": "4903722", "N50 (bp)": "4903722", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.0", "Number of CDSs": "4329", "Average Protein Length": "315.7", "Coding Ratio (%)": "82.6", "Number of rRNAs": "22", "Number of tRNAs": "85", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Yersinia similis", "strain": "strain=228", "accession": "GCA_000582515.1", "taxid": 367190, "species_taxid": 367190, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1652, "total_fragments": 1654, "ani_threshold": 95, 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