{
    "type": "genome",
    "identifier": "GCF_000583675.1",
    "organism": "Saccharicrinis fermentans DSM 9555 = JCM 21142",
    "title": "Saccharicrinis fermentans DSM 9555 = JCM 21142",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Tokyo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000583675.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00008733",
        "wgs_master": "BAMD00000000.1",
        "refseq_category": "na",
        "taxid": "869213",
        "species_taxid": "982",
        "organism_name": "Saccharicrinis fermentans DSM 9555 = JCM 21142",
        "infraspecific_name": "strain=JCM 21142",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/02/27",
        "asm_name": "ASM58367v1",
        "asm_submitter": "The University of Tokyo",
        "gbrs_paired_asm": "GCA_000583675.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/583/675/GCF_000583675.1_ASM58367v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5649521",
        "genome_size_ungapped": "5649521",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "299",
        "contig_count": "299",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000583675.1-RS_2024_12_23",
        "annotation_date": "2024-12-23",
        "total_gene_count": "4775",
        "protein_coding_gene_count": "4570",
        "non_coding_gene_count": "51",
        "pubmed_id": "24675859"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-02-27",
    "dateModified": "2014-02-27",
    "datePublished": "2014-02-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Saccharicrinis fermentans DSM 9555 = JCM 21142"
        ],
        "sample_taxid": [
            "869213"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.607 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5649521",
        "Number of Sequences": "299",
        "Longest Sequences (bp)": "218358",
        "N50 (bp)": "59017",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.4",
        "Number of CDSs": "4576",
        "Average Protein Length": "344.6",
        "Coding Ratio (%)": "83.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
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            },
            {
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            },
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                "accession": "GCA_005877885.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "species_taxid": 1168039,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharicrinis aurantiacus",
                "strain": "strain=HQYD1",
                "accession": "GCA_001660705.2",
                "taxid": 1849719,
                "species_taxid": 1849719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.045,
                "matched_fragments": 158,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Carboxylicivirga linearis",
                "strain": "strain=FB218",
                "accession": "GCA_018271995.1",
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                "species_taxid": 1628157,
                "relation_to_type": "type",
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                "ani": 76.8794,
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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                "accession": "GCF_000517085.1",
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                "min_intra_species_ani": "99.97",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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            },
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": null,
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        "coccobacillus_cell_shape": null,
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    "_genome_taxon": [
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        "DSM",
        "9555",
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        "21142"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}