{
    "type": "genome",
    "identifier": "GCF_000585495.1",
    "organism": "Thermococcus nautili",
    "title": "Thermococcus nautili",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute de Genetique et Microbiologie",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000585495.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03081537",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "195522",
        "species_taxid": "195522",
        "organism_name": "Thermococcus nautili",
        "infraspecific_name": "strain=30-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/03/05",
        "asm_name": "ASM58549v1",
        "asm_submitter": "Institute de Genetique et Microbiologie",
        "gbrs_paired_asm": "GCA_000585495.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/585/495/GCF_000585495.1_ASM58549v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "1976356",
        "genome_size_ungapped": "1976356",
        "gc_percent": "55.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000585495.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "2234",
        "protein_coding_gene_count": "2171",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-03-05",
    "dateModified": "2014-03-05",
    "datePublished": "2014-03-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermococcus nautili"
        ],
        "sample_taxid": [
            "195522"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.557 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1976356",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1976356",
        "N50 (bp)": "1976356",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.8",
        "Number of CDSs": "2187",
        "Average Protein Length": "276.7",
        "Coding Ratio (%)": "91.9",
        "Number of rRNAs": "4",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Thermococcus nautili",
                "strain": "strain=30-1",
                "accession": "GCA_000585495.1",
                "taxid": 195522,
                "species_taxid": 195522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 658,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermococcus henrietii",
                "strain": "strain=EXT12c",
                "accession": "GCA_900198835.1",
                "taxid": 2016361,
                "species_taxid": 2016361,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.2632,
                "matched_fragments": 556,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus gammatolerans",
                "strain": "strain=EJ3; DSM 15229",
                "accession": "GCA_000022365.1",
                "taxid": 187878,
                "species_taxid": 187878,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4126,
                "matched_fragments": 411,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus eurythermalis",
                "strain": "strain=A501",
                "accession": "GCA_000769655.1",
                "taxid": 1505907,
                "species_taxid": 1505907,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5714,
                "matched_fragments": 503,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus guaymasensis",
                "strain": "strain=DSM 11113",
                "accession": "GCA_000816105.1",
                "taxid": 110164,
                "species_taxid": 110164,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5319,
                "matched_fragments": 388,
                "total_fragments": 658,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000585495.1",
                "gtdb_species": "s__Thermococcus nautili",
                "ani": 100.0,
                "matched_fragments": 658,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "97.44",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900198835.1",
                "gtdb_species": "s__Thermococcus sp900198835",
                "ani": 92.2632,
                "matched_fragments": 556,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012027635.1",
                "gtdb_species": "s__Thermococcus sp012027635",
                "ani": 92.1881,
                "matched_fragments": 560,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000151205.2",
                "gtdb_species": "s__Thermococcus sp000151205",
                "ani": 87.7831,
                "matched_fragments": 454,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000022365.1",
                "gtdb_species": "s__Thermococcus gammatolerans",
                "ani": 85.3863,
                "matched_fragments": 412,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000769655.1",
                "gtdb_species": "s__Thermococcus eurythermalis",
                "ani": 84.5646,
                "matched_fragments": 504,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015523185.1",
                "gtdb_species": "s__Thermococcus sp015523185",
                "ani": 82.2068,
                "matched_fragments": 402,
                "total_fragments": 658,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.10",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.06,
        "cell_length": 0.06,
        "doubling_h": -0.023,
        "growth_tmp": 87.8,
        "optimum_tmp": 83.045,
        "optimum_ph": 7.116,
        "genome_size": 1976357.333,
        "gc_content": 54.8,
        "coding_genes": 2165.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.833,
        "range_salinity": 0.5,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Thermococcus",
        "nautili"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}