{ "type": "genome", "identifier": "GCF_000591415.1", "organism": "Cobetia crustatorum", "title": "Cobetia crustatorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000591415.1", "bioproject": "PRJNA224116", "biosample": "SAMN02640257", "wgs_master": "JEMF00000000.1", "refseq_category": "na", "taxid": "553385", "species_taxid": "553385", "organism_name": "Cobetia crustatorum", "infraspecific_name": "strain=JO1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/03/17", "asm_name": "Draft genome of Cobetia crustatorum JO1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_000591415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/591/415/GCF_000591415.1_Draft_genome_of_Cobetia_crustatorum_JO1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4049952", "genome_size_ungapped": "4049952", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "138", "contig_count": "138", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000591415.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "3601", "protein_coding_gene_count": "3322", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-03-17", "dateModified": "2014-03-17", "datePublished": "2014-03-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Cobetia crustatorum" ], "sample_taxid": [ "553385" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Korea: Daejeon" ], "sample_host_location_id": [], "data_size": "1.153 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4049952", "Number of Sequences": "138", "Longest Sequences (bp)": "185990", "N50 (bp)": "52455", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.5", "Number of CDSs": "3660", "Average Protein Length": "310.0", "Coding Ratio (%)": "84.0", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cobetia crustatorum", "strain": "strain=JO1", "accession": "GCA_000591415.1", "taxid": 553385, "species_taxid": 553385, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1273, "total_fragments": 1275, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cobetia marina", "strain": "strain=JCM 21022", "accession": "GCA_001720485.1", "taxid": 28258, "species_taxid": 28258, "relation_to_type": "type", "validated": true, "ani": 83.9516, "matched_fragments": 939, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 78.0851, "matched_fragments": 203, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas saccharevitans", "strain": "strain=CGMCC 1.6493", "accession": "GCA_900116405.1", "taxid": 416872, "species_taxid": 416872, "relation_to_type": "type", "validated": true, "ani": 78.0643, "matched_fragments": 209, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alkalisoli", "strain": "strain=M5N1S17", "accession": "GCA_021412585.1", "taxid": 2907158, "species_taxid": 2907158, "relation_to_type": "type", "validated": true, "ani": 78.0277, "matched_fragments": 228, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halophila", "strain": "strain=NBRC 102604", "accession": "GCA_007989465.1", "taxid": 29573, "species_taxid": 29573, "relation_to_type": "type", "validated": true, "ani": 77.999, "matched_fragments": 280, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 77.9853, "matched_fragments": 232, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas 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"GCA_023061285.1", "taxid": 119863, "species_taxid": 119863, "relation_to_type": "type", "validated": true, "ani": 77.8011, "matched_fragments": 187, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 77.769, "matched_fragments": 237, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola endophyticus", "strain": "strain=CPA92", "accession": "GCA_003206575.1", "taxid": 1949083, "species_taxid": 1949083, "relation_to_type": "type", "validated": true, "ani": 77.7646, "matched_fragments": 242, "total_fragments": 1275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas organivorans", "strain": "strain=CECT 5995", "accession": "GCA_014192055.1", "taxid": 257772, 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