{ "type": "genome", "identifier": "GCF_000600005.1", "organism": "Snodgrassella alvi wkB2", "title": "Snodgrassella alvi wkB2", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yale University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000600005.1", "bioproject": "PRJNA224116", "biosample": "SAMN03081540", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1196094", "species_taxid": "1196083", "organism_name": "Snodgrassella alvi wkB2", "infraspecific_name": "strain=wkB2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/03/25", "asm_name": "ASM60000v1", "asm_submitter": "Yale University", "gbrs_paired_asm": "GCA_000600005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/600/005/GCF_000600005.1_ASM60000v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2527978", "genome_size_ungapped": "2527978", "gc_percent": "41.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000600005.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2298", "protein_coding_gene_count": "2214", "non_coding_gene_count": "76", "pubmed_id": "25053814" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-03-25", "dateModified": "2014-03-25", "datePublished": "2014-03-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Snodgrassella alvi wkB2" ], "sample_taxid": [ "1196094" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.708 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2527978", "Number of Sequences": "1", "Longest Sequences (bp)": "2527978", "N50 (bp)": "2527978", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.3", "Number of CDSs": "2241", "Average Protein Length": "313.9", "Coding Ratio (%)": "83.5", "Number of rRNAs": "12", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Snodgrassella alvi", "strain": "strain=wkB2", "accession": "GCA_000600005.1", "taxid": 1196083, "species_taxid": 1196083, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 841, "total_fragments": 842, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Snodgrassella alvi", "strain": "strain=wkB2", "accession": "GCA_022870965.1", "taxid": 1196083, "species_taxid": 1196083, "relation_to_type": "type", "validated": true, "ani": 99.996, "matched_fragments": 840, "total_fragments": 842, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Snodgrassella gandavensis", "strain": "strain=LMG 30236", "accession": "GCA_914768025.1", "taxid": 2946698, "species_taxid": 2946698, "relation_to_type": "type", "validated": true, "ani": 81.7851, "matched_fragments": 557, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Snodgrassella communis", "strain": "strain=LMG 28360", "accession": "GCA_914768045.1", "taxid": 2946699, "species_taxid": 2946699, "relation_to_type": "type", "validated": true, "ani": 81.2257, "matched_fragments": 500, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria arctica", "strain": "strain=KH1503", "accession": "GCA_022870905.1", "taxid": 1470200, "species_taxid": 1470200, "relation_to_type": "type", "validated": true, "ani": 79.0231, "matched_fragments": 55, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria zalophi", "strain": "strain=ATCC BAA-2455", "accession": "GCA_008807015.1", "taxid": 640030, "species_taxid": 640030, "relation_to_type": "type", "validated": true, "ani": 78.6339, "matched_fragments": 56, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria arctica", "strain": "strain=KH1503", "accession": "GCA_001027865.1", "taxid": 1470200, "species_taxid": 1470200, "relation_to_type": "type", "validated": true, "ani": 77.4113, "matched_fragments": 51, "total_fragments": 842, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenoxybacter acetivorans", "strain": "strain=DSM 19021", "accession": "GCA_000745895.1", 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