{ "type": "genome", "identifier": "GCF_000600105.1", "organism": "Lysinibacillus varians", "title": "Lysinibacillus varians", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000600105.1", "bioproject": "PRJNA224116", "biosample": "SAMN03081497", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1145276", "species_taxid": "1145276", "organism_name": "Lysinibacillus varians", "infraspecific_name": "strain=GY32", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/03/25", "asm_name": "ASM60010v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_000600105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/600/105/GCF_000600105.1_ASM60010v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4662822", "genome_size_ungapped": "4662822", "gc_percent": "37.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000600105.1-RS_2024_12_02", "annotation_date": "2024-12-02", "total_gene_count": "4622", "protein_coding_gene_count": "4440", "non_coding_gene_count": "134", "pubmed_id": "25070216" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-03-25", "dateModified": "2014-03-25", "datePublished": "2014-03-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysinibacillus varians" ], "sample_taxid": [ "1145276" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"status": "inconclusive" }, { "organism_name": "Lysinibacillus mangiferihumi", "strain": "strain=CCTCC AB 2010389", "accession": "GCA_005217845.1", "taxid": 1130819, "species_taxid": 1130819, "relation_to_type": "type", "validated": true, "ani": 96.9711, "matched_fragments": 1315, "total_fragments": 1554, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Lysinibacillus cavernae", "strain": "strain=SYSU K30005", "accession": "GCA_009724685.1", "taxid": 2666135, "species_taxid": 2666135, "relation_to_type": "type", "validated": true, "ani": 81.7232, "matched_fragments": 748, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus contaminans", "strain": "strain=DSM 25560", "accession": "GCA_001278945.1", "taxid": 1293441, "species_taxid": 1293441, "relation_to_type": "type", "validated": true, "ani": 80.4881, "matched_fragments": 592, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { 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} ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.083, "cell_length": 0.466, "doubling_h": null, "growth_tmp": 30.812, "optimum_tmp": 37.0, "optimum_ph": 7.361, "genome_size": 4662821.5, "gc_content": 37.2, "coding_genes": 4442.0, "rRNA16S_genes": 10.0, "tRNA_genes": 98.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 0.0, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lysinibacillus", "varians" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }