{
    "type": "genome",
    "identifier": "GCF_000603945.1",
    "organism": "Actinotalea ferrariae CF5-4",
    "title": "Actinotalea ferrariae CF5-4",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Huazhong Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000603945.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02690685",
        "wgs_master": "AXCW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "948458",
        "species_taxid": "1386098",
        "organism_name": "Actinotalea ferrariae CF5-4",
        "infraspecific_name": "strain=CF5-4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/03/28",
        "asm_name": "genome",
        "asm_submitter": "Huazhong Agricultural University",
        "gbrs_paired_asm": "GCA_000603945.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/603/945/GCF_000603945.1_genome",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3987077",
        "genome_size_ungapped": "3987077",
        "gc_percent": "74.000000",
        "replicon_count": "0",
        "scaffold_count": "626",
        "contig_count": "626",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000603945.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "3947",
        "protein_coding_gene_count": "3726",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-03-28",
    "dateModified": "2014-03-28",
    "datePublished": "2014-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinotalea ferrariae CF5-4"
        ],
        "sample_taxid": [
            "948458"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Daye city, Hubei province"
        ],
        "sample_host_location_id": [],
        "data_size": "1.056 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3987077",
        "Number of Sequences": "626",
        "Longest Sequences (bp)": "137612",
        "N50 (bp)": "15849",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "73.8",
        "Number of CDSs": "3279",
        "Average Protein Length": "313.3",
        "Coding Ratio (%)": "77.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Cellulomonas carbonis",
                "strain": "strain=T26",
                "accession": "GCA_000767175.1",
                "taxid": 1386092,
                "species_taxid": 1386092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0114,
                "matched_fragments": 626,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas carbonis",
                "strain": "strain=CGMCC 1.10786",
                "accession": "GCA_014636275.1",
                "taxid": 1386092,
                "species_taxid": 1386092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9091,
                "matched_fragments": 660,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinotalea solisilvae",
                "strain": "strain=KACC 19191",
                "accession": "GCA_016464425.1",
                "taxid": 2072922,
                "species_taxid": 2072922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7071,
                "matched_fragments": 623,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinotalea subterranea",
                "strain": "strain=HO-Ch2",
                "accession": "GCA_008364845.1",
                "taxid": 2607497,
                "species_taxid": 2607497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.071,
                "matched_fragments": 563,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas cellasea",
                "strain": "strain=DSM 20118",
                "accession": "GCA_000767135.1",
                "taxid": 43670,
                "species_taxid": 43670,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.295,
                "matched_fragments": 458,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas hominis",
                "strain": "strain=DSM 9581",
                "accession": "GCA_014201095.1",
                "taxid": 156981,
                "species_taxid": 156981,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.2647,
                "matched_fragments": 517,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas hominis",
                "strain": "strain=NBRC 16055",
                "accession": "GCA_007989225.1",
                "taxid": 156981,
                "species_taxid": 156981,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.2171,
                "matched_fragments": 505,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas biazotea",
                "strain": "strain=NBRC12680",
                "accession": "GCA_004306155.1",
                "taxid": 1709,
                "species_taxid": 1709,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1456,
                "matched_fragments": 488,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas massiliensis",
                "strain": "strain=JC225",
                "accession": "GCA_000312005.1",
                "taxid": 1465811,
                "species_taxid": 1465811,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1123,
                "matched_fragments": 468,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas palmilytica",
                "strain": "strain=EW123",
                "accession": "GCA_021590045.1",
                "taxid": 2608402,
                "species_taxid": 2608402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.075,
                "matched_fragments": 454,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas gelida",
                "strain": "strain=JCM 1490",
                "accession": "GCA_014647015.1",
                "taxid": 1712,
                "species_taxid": 1712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9204,
                "matched_fragments": 445,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas gelida",
                "strain": "strain=NBRC 3748",
                "accession": "GCA_006538725.1",
                "taxid": 1712,
                "species_taxid": 1712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9157,
                "matched_fragments": 438,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavimobilis marinus",
                "strain": "strain=DSM 19083",
                "accession": "GCA_900113055.1",
                "taxid": 285351,
                "species_taxid": 285351,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8623,
                "matched_fragments": 371,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas fulva",
                "strain": "strain=DKR-3",
                "accession": "GCA_018531375.1",
                "taxid": 2835530,
                "species_taxid": 2835530,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8482,
                "matched_fragments": 456,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas avistercoris",
                "strain": "strain=Sa3CUA2",
                "accession": "GCA_014836445.1",
                "taxid": 2762242,
                "species_taxid": 2762242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8022,
                "matched_fragments": 487,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia jenensis",
                "strain": "strain=DSM 46000",
                "accession": "GCA_016907235.1",
                "taxid": 162169,
                "species_taxid": 162169,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6424,
                "matched_fragments": 416,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulosimicrobium marinum",
                "strain": "strain=NBRC 110994",
                "accession": "GCA_020551945.1",
                "taxid": 1638992,
                "species_taxid": 1638992,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5873,
                "matched_fragments": 468,
                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000603945.1",
                "gtdb_species": "s__Actinotalea ferrariae",
                "ani": 100.0,
                "matched_fragments": 1064,
                "total_fragments": 1077,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_014360395.1",
                "gtdb_species": "s__Actinotalea sp014360395",
                "ani": 84.6894,
                "matched_fragments": 501,
                "total_fragments": 1077,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014636275.1",
                "gtdb_species": "s__Actinotalea carbonis",
                "ani": 81.9409,
                "matched_fragments": 657,
                "total_fragments": 1077,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016464425.1",
                "gtdb_species": "s__Actinotalea solisilvae",
                "ani": 80.7312,
                "matched_fragments": 621,
                "total_fragments": 1077,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014042015.1",
                "gtdb_species": "s__Actinotalea sp014042015",
                "ani": 80.6342,
                "matched_fragments": 538,
                "total_fragments": 1077,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.62",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009996735.1",
                "gtdb_species": "s__Actinotalea sp009996735",
                "ani": 80.5748,
                "matched_fragments": 573,
                "total_fragments": 1077,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008364845.1",
                "gtdb_species": "s__Actinotalea sp008364845",
                "ani": 80.0807,
                "matched_fragments": 562,
                "total_fragments": 1077,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017565425.1",
                "gtdb_species": "s__Actinotalea sp017565425",
                "ani": 80.0423,
                "matched_fragments": 518,
                "total_fragments": 1077,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000767215.1",
                "gtdb_species": "s__Actinotalea fermentans",
                "ani": 79.7815,
                "matched_fragments": 425,
                "total_fragments": 1077,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_901521055.1",
                "gtdb_species": "s__Cellulomonas hominis_C",
                "ani": 79.2828,
                "matched_fragments": 463,
                "total_fragments": 1077,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000312005.1",
                "gtdb_species": "s__Cellulomonas massiliensis",
                "ani": 79.1118,
                "matched_fragments": 468,
                "total_fragments": 1077,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017744555.1",
                "gtdb_species": "s__Cellulomonas sp017744555",
                "ani": 78.8052,
                "matched_fragments": 452,
                "total_fragments": 1077,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018388465.1",
                "gtdb_species": "s__Cellulomonas sp018388465",
                "ani": 78.6571,
                "matched_fragments": 459,
                "total_fragments": 1077,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.29",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_010287905.1",
                "gtdb_species": "s__Cellulosimicrobium fucosivorans",
                "ani": 78.5027,
                "matched_fragments": 504,
                "total_fragments": 1077,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.84",
                "min_intra_species_ani": "98.55",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.699,
        "cell_length": -0.222,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 2155854.5,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Actinotalea",
        "ferrariae",
        "CF5-4"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}