{ "type": "genome", "identifier": "GCF_000612825.1", "organism": "Mycolicibacterium mageritense DSM 44476 = CIP 104973", "title": "Mycolicibacterium mageritense DSM 44476 = CIP 104973", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000612825.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3138978", "wgs_master": "CCBF000000000.1", "refseq_category": "na", "taxid": "1209984", "species_taxid": "53462", "organism_name": "Mycolicibacterium mageritense DSM 44476 = CIP 104973", "infraspecific_name": "strain=CIP 104973", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/03/31", "asm_name": "PRJEB5749_assembly_1", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_000612825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/612/825/GCF_000612825.1_PRJEB5749_assembly_1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7966608", "genome_size_ungapped": "7966608", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000612825.1-RS_2024_04_10", "annotation_date": "2024-04-10", "total_gene_count": "7766", "protein_coding_gene_count": "7576", "non_coding_gene_count": "92", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-03-31", "dateModified": "2014-03-31", "datePublished": "2014-03-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium mageritense DSM 44476 = CIP 104973" ], "sample_taxid": [ "1209984" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "2.182 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7966608", "Number of Sequences": "6", "Longest Sequences (bp)": "4503241", "N50 (bp)": "4503241", "Gap Ratio (%)": "0.000013", "GCcontent (%)": "66.9", "Number of CDSs": "7750", "Average Protein Length": "318.7", "Coding Ratio (%)": "93.0", "Number of rRNAs": "4", "Number of tRNAs": "93", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=CIP 104973", "accession": "GCA_000612825.1", "taxid": 53462, 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82.1518, "matched_fragments": 1315, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Mycobacterium] fortunisiensis", "strain": "strain=TNTM28", "accession": "GCA_019050325.1", "taxid": 2600579, "species_taxid": 2600579, "relation_to_type": "type", "validated": true, "ani": 82.1364, "matched_fragments": 1236, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium setense", "strain": "strain=DSM 45070", "accession": "GCA_000805385.1", "taxid": 431269, "species_taxid": 431269, "relation_to_type": "type", "validated": true, "ani": 82.1302, "matched_fragments": 1303, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 82.011, 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"total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium llatzerense", "strain": "strain=MG13", "accession": "GCA_025331195.1", "taxid": 280871, "species_taxid": 280871, "relation_to_type": "type", "validated": true, "ani": 79.988, "matched_fragments": 943, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chitae", "strain": "strain=JCM 12403", "accession": "GCA_010727725.1", "taxid": 1792, "species_taxid": 1792, "relation_to_type": "type", "validated": true, "ani": 79.9119, "matched_fragments": 924, "total_fragments": 2653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": "strain=JCM 16370", "accession": "GCA_019456675.1", "taxid": 370524, "species_taxid": 370524, "relation_to_type": "type", "validated": true, "ani": 79.6143, "matched_fragments": 901, "total_fragments": 2653, "ani_threshold": 95, "status": 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