{ "type": "genome", "identifier": "GCF_000613245.1", "organism": "Mycobacterium asiaticum DSM 44297", "title": "Mycobacterium asiaticum DSM 44297", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000613245.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3138999", "wgs_master": "CCBD000000000.1", "refseq_category": "na", "taxid": "1265310", "species_taxid": "1790", "organism_name": "Mycobacterium asiaticum DSM 44297", "infraspecific_name": "strain=DSM 44297", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/03/26", "asm_name": "PRJEB5743_assembly_1", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_000613245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/613/245/GCF_000613245.1_PRJEB5743_assembly_1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5938932", "genome_size_ungapped": "5910436", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "103", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000613245.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "5619", "protein_coding_gene_count": "5301", "non_coding_gene_count": "54", "pubmed_id": "24744338" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-03-26", "dateModified": "2014-03-26", "datePublished": "2014-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium asiaticum DSM 44297" ], "sample_taxid": [ "1265310" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.632 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5938932", "Number of Sequences": "10", "Longest Sequences (bp)": "2235526", "N50 (bp)": "1878264", "Gap Ratio (%)": "0.479817", "GCcontent (%)": "66.3", "Number of CDSs": "5588", "Average Protein Length": "325.0", "Coding Ratio (%)": "91.8", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium asiaticum", "strain": "strain=DSM 44297", "accession": "GCA_000613245.1", "taxid": 1790, "species_taxid": 1790, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1973, "total_fragments": 1976, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium asiaticum", "strain": "strain=DSM 44297", "accession": "GCA_002086545.1", "taxid": 1790, "species_taxid": 1790, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9312, "matched_fragments": 1911, "total_fragments": 1976, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium paragordonae", "strain": "strain=49061", "accession": "GCA_003614435.1", "taxid": 1389713, "species_taxid": 1389713, "relation_to_type": "type", "validated": true, "ani": 81.8993, "matched_fragments": 1422, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paragordonae", "strain": "strain=JCM 18565", "accession": "GCA_010723415.1", "taxid": 1389713, "species_taxid": 1389713, "relation_to_type": "type", "validated": true, "ani": 81.8964, "matched_fragments": 1433, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium gordonae", "strain": "strain=DSM 44160", "accession": "GCA_002101675.1", "taxid": 1778, "species_taxid": 1778, "relation_to_type": "type", "validated": true, "ani": 81.5988, "matched_fragments": 1337, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=DSM 44156", "accession": "GCA_009741445.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 81.0804, "matched_fragments": 1057, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=ATCC 25291", "accession": "GCA_000174035.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 81.0627, "matched_fragments": 994, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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