{ "type": "genome", "identifier": "GCF_000613285.1", "organism": "Acetobacter papayae JCM 25143", "title": "Acetobacter papayae JCM 25143", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000613285.1", "bioproject": "PRJNA224116", "biosample": "SAMD00008625", "wgs_master": "BAIN00000000.1", "refseq_category": "reference genome", "taxid": "1234671", "species_taxid": "1076592", "organism_name": "Acetobacter papayae JCM 25143", "infraspecific_name": "strain=JCM 25143", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/03/31", "asm_name": "ASM61328v1", "asm_submitter": "The University of Tokyo", "gbrs_paired_asm": "GCA_000613285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/613/285/GCF_000613285.1_ASM61328v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3041080", "genome_size_ungapped": "3041080", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "177", "contig_count": "177", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000613285.1-RS_2024_12_15", "annotation_date": "2024-12-15", "total_gene_count": "3220", "protein_coding_gene_count": "2489", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-03-31", "dateModified": "2014-03-31", "datePublished": "2014-03-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter papayae JCM 25143" ], "sample_taxid": [ "1234671" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.859 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 86.46, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3041080", "Number of Sequences": "177", "Longest Sequences (bp)": "175293", "N50 (bp)": "38686", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.3", "Number of CDSs": "3403", "Average Protein Length": "248.5", "Coding Ratio (%)": "83.4", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter papayae", "strain": "strain=JCM 25143", "accession": "GCA_000613285.1", "taxid": 1076592, "species_taxid": 1076592, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 917, "total_fragments": 923, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter peroxydans", "strain": "strain=NBRC 13755", "accession": "GCA_006539345.1", "taxid": 104098, "species_taxid": 104098, "relation_to_type": "type", "validated": true, "ani": 86.4028, "matched_fragments": 680, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter peroxydans", "strain": "strain=LMG 1635", "accession": "GCA_011516745.1", "taxid": 104098, "species_taxid": 104098, "relation_to_type": "type", "validated": true, "ani": 86.3106, "matched_fragments": 681, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter garciniae", "strain": "strain=TBRC 12339", "accession": "GCA_017377735.1", "taxid": 2817435, "species_taxid": 2817435, "relation_to_type": "type", "validated": true, "ani": 80.4433, "matched_fragments": 414, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" }, { 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