{ "type": "genome", "identifier": "GCF_000613305.1", "organism": "Komagataeibacter kakiaceti JCM 25156", "title": "Komagataeibacter kakiaceti JCM 25156", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000613305.1", "bioproject": "PRJNA224116", "biosample": "SAMD00004030", "wgs_master": "BAIO00000000.1", "refseq_category": "reference genome", "taxid": "1234672", "species_taxid": "943261", "organism_name": "Komagataeibacter kakiaceti JCM 25156", "infraspecific_name": "strain=JCM 25156", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/03/31", "asm_name": "ASM61330v1", "asm_submitter": "The University of Tokyo", "gbrs_paired_asm": "GCA_000613305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/613/305/GCF_000613305.1_ASM61330v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3133102", "genome_size_ungapped": "3133102", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "947", "contig_count": "947", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000613305.1-RS_2024_12_22", "annotation_date": "2024-12-22", "total_gene_count": "3821", "protein_coding_gene_count": "2691", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-03-31", "dateModified": "2014-03-31", "datePublished": "2014-03-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Komagataeibacter kakiaceti JCM 25156" ], "sample_taxid": [ "1234672" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.881 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3133102", "Number of Sequences": "947", "Longest Sequences (bp)": "100730", "N50 (bp)": "5713", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.1", "Number of CDSs": "2981", "Average Protein Length": "219.3", "Coding Ratio (%)": "62.6", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Komagataeibacter kakiaceti", "strain": "strain=JCM 25156", "accession": "GCA_000613305.1", "taxid": 943261, "species_taxid": 943261, "relation_to_type": 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85.4589, "matched_fragments": 375, "total_fragments": 621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter saccharivorans", "strain": "strain=LMG 1582", "accession": "GCA_003207825.1", "taxid": 265959, "species_taxid": 265959, "relation_to_type": "type", "validated": true, "ani": 85.0972, "matched_fragments": 357, "total_fragments": 621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter intermedius", "strain": "strain=TF2", "accession": "GCA_000964425.1", "taxid": 66229, "species_taxid": 66229, "relation_to_type": "type", "validated": true, "ani": 84.993, "matched_fragments": 365, "total_fragments": 621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter oboediens", "strain": "strain=LMG 18849", "accession": "GCA_003207815.1", "taxid": 65958, "species_taxid": 65958, "relation_to_type": "type", "validated": true, "ani": 84.9461, "matched_fragments": 360, 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"status": "below_threshold" }, { "organism_name": "Asaia lannensis", "strain": "strain=NBRC 102526", "accession": "GCA_024054035.1", "taxid": 415421, "species_taxid": 415421, "relation_to_type": "type", "validated": true, "ani": 78.0341, "matched_fragments": 76, "total_fragments": 621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius lipocyclicus", "strain": "strain=CCUG 44693", "accession": "GCA_009900765.1", "taxid": 268410, "species_taxid": 268410, "relation_to_type": "type", "validated": true, "ani": 77.1223, "matched_fragments": 87, "total_fragments": 621, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014199155.1", "gtdb_species": "s__Komagataeibacter kakiaceti", "ani": 99.9369, "matched_fragments": 620, "total_fragments": 621, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003403295.1", "gtdb_species": "s__Komagataeibacter melaceti", "ani": 89.0314, "matched_fragments": 457, "total_fragments": 621, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000285295.1", "gtdb_species": "s__Komagataeibacter europaeus", "ani": 85.787, "matched_fragments": 398, "total_fragments": 621, "gtdb_taxonomy": 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