{ "type": "genome", "identifier": "GCF_000613365.1", "organism": "Prevotella corporis DSM 18810 = JCM 8529", "title": "Prevotella corporis DSM 18810 = JCM 8529", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000613365.1", "bioproject": "PRJNA224116", "biosample": "SAMD00015865", "wgs_master": "BAIT00000000.1", "refseq_category": "na", "taxid": "1122981", "species_taxid": "28128", "organism_name": "Prevotella corporis DSM 18810 = JCM 8529", "infraspecific_name": "strain=JCM 8529", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/03/31", "asm_name": "ASM61336v1", "asm_submitter": "The University of Tokyo", "gbrs_paired_asm": "GCA_000613365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/613/365/GCF_000613365.1_ASM61336v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2778426", "genome_size_ungapped": "2778426", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "159", "contig_count": "159", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000613365.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "2562", "protein_coding_gene_count": "2077", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-03-31", "dateModified": "2014-03-31", "datePublished": "2014-03-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella corporis DSM 18810 = JCM 8529" ], "sample_taxid": [ "1122981" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.796 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.61, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2778426", "Number of Sequences": "159", "Longest Sequences (bp)": "133811", "N50 (bp)": "44494", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.2", "Number of CDSs": "2549", "Average Protein Length": "293.8", "Coding Ratio (%)": "80.9", "Number of rRNAs": "2", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella corporis", "strain": "strain=JCM 8529", "accession": "GCA_000613365.1", "taxid": 28128, "species_taxid": 28128, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 844, "total_fragments": 851, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella corporis", "strain": "strain=DSM 18810", "accession": "GCA_000430525.1", "taxid": 28128, "species_taxid": 28128, "relation_to_type": "type", "validated": true, "ani": 99.9185, "matched_fragments": 844, "total_fragments": 851, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella colorans", "strain": "strain=DSM 100333", "accession": "GCA_003096815.1", "taxid": 1703337, "species_taxid": 1703337, "relation_to_type": "type", "validated": true, "ani": 85.096, "matched_fragments": 102, "total_fragments": 851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella brunnea", "strain": "strain=A2672", "accession": "GCA_008016795.1", "taxid": 2508867, "species_taxid": 2508867, "relation_to_type": "type", "validated": true, "ani": 84.9609, "matched_fragments": 335, "total_fragments": 851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=W2052", "accession": "GCA_001683355.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 80.6006, "matched_fragments": 128, "total_fragments": 851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=W2052", "accession": "GCA_018127785.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 80.4217, "matched_fragments": 127, "total_fragments": 851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=DSM 22613", "accession": "GCA_900129535.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 80.3421, "matched_fragments": 122, "total_fragments": 851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella loescheii", "strain": "strain=DSM 19665", "accession": "GCA_000378085.1", "taxid": 840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 80.0443, "matched_fragments": 51, "total_fragments": 851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella vespertina", "strain": "strain=A2879", "accession": "GCA_009728485.1", "taxid": 2608404, "species_taxid": 2608404, "relation_to_type": "type", "validated": true, "ani": 79.9809, "matched_fragments": 103, "total_fragments": 851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella jejuni", "strain": "strain=DSM 26989", "accession": "GCA_900187995.1", "taxid": 1177574, "species_taxid": 1177574, "relation_to_type": "type", "validated": true, "ani": 79.5551, "matched_fragments": 108, "total_fragments": 851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=DSM 20706", "accession": "GCA_000439065.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 79.1777, "matched_fragments": 165, "total_fragments": 851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 79.1402, "matched_fragments": 168, "total_fragments": 851, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.61, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000430525.1", "gtdb_species": "s__Prevotella corporis", "ani": 99.9185, "matched_fragments": 844, "total_fragments": 851, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "97.78", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_008016795.1", "gtdb_species": "s__Prevotella brunnea", "ani": 84.9173, "matched_fragments": 337, "total_fragments": 851, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "99.23", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003043945.1", "gtdb_species": "s__Prevotella sp003043945", "ani": 81.3601, "matched_fragments": 85, "total_fragments": 851, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.81", "min_intra_species_ani": "99.81", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018127785.1", "gtdb_species": "s__Prevotella scopos", "ani": 80.4505, "matched_fragments": 126, "total_fragments": 851, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000257925.1", "gtdb_species": "s__Prevotella sp000257925", "ani": 80.3545, "matched_fragments": 108, "total_fragments": 851, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "96.99", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_000377625.1", "gtdb_species": "s__Prevotella veroralis", "ani": 80.3284, "matched_fragments": 108, "total_fragments": 851, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "96.65", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900187995.1", "gtdb_species": "s__Prevotella jejuni", "ani": 79.5875, "matched_fragments": 106, "total_fragments": 851, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.22", "min_intra_species_ani": "96.57", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_000614025.1", "gtdb_species": "s__Prevotella aurantiaca", "ani": 79.4865, "matched_fragments": 142, "total_fragments": 851, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001953955.1", "gtdb_species": "s__Prevotella intermedia", "ani": 79.2463, "matched_fragments": 171, "total_fragments": 851, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.61", "min_intra_species_ani": "96.13", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 34, "status": "-" }, { "accession": "GCF_000688375.1", "gtdb_species": "s__Prevotella sp000688375", "ani": 78.8644, "matched_fragments": 202, "total_fragments": 851, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000613945.1", "gtdb_species": "s__Prevotella falsenii", "ani": 78.8363, "matched_fragments": 146, "total_fragments": 851, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003609775.1", "gtdb_species": "s__Prevotella melaninogenica_A", "ani": 78.4607, "matched_fragments": 93, "total_fragments": 851, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905236755.1", "gtdb_species": "s__Prevotella sp905236755", "ani": 77.0624, "matched_fragments": 57, "total_fragments": 851, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.83", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.68", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_900315635.1", "gtdb_species": "s__Prevotella sp900315635", "ani": 76.6655, "matched_fragments": 62, "total_fragments": 851, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.69", "min_intra_species_ani": "99.39", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.046, "cell_length": 0.204, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 7.109, "genome_size": 2788669.0, "gc_content": 45.137, "coding_genes": 2508.172, "rRNA16S_genes": 4.0, "tRNA_genes": 50.875, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Prevotella", "corporis", "DSM", "18810", "=", "JCM", "8529" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }