{ "type": "genome", "identifier": "GCF_000613625.1", "organism": "Hoylesella marshii DSM 16973 = JCM 13450", "title": "Hoylesella marshii DSM 16973 = JCM 13450", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000613625.1", "bioproject": "PRJNA224116", "biosample": "SAMD00009951", "wgs_master": "BAJI00000000.1", "refseq_category": "na", "taxid": "862515", "species_taxid": "189722", "organism_name": "Hoylesella marshii DSM 16973 = JCM 13450", "infraspecific_name": "strain=JCM 13450", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/03/31", "asm_name": "ASM61362v1", "asm_submitter": "The University of Tokyo", "gbrs_paired_asm": "GCA_000613625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/613/625/GCF_000613625.1_ASM61362v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2518161", "genome_size_ungapped": "2518161", "gc_percent": "47.500000", "replicon_count": "0", "scaffold_count": "80", "contig_count": "80", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-09-14", "total_gene_count": "2201", "protein_coding_gene_count": "1890", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-03-31", "dateModified": "2014-03-31", "datePublished": "2014-03-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Hoylesella marshii DSM 16973 = JCM 13450" ], "sample_taxid": [ "862515" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.720 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2518161", "Number of Sequences": "80", "Longest Sequences (bp)": "210833", "N50 (bp)": "66797", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.4", "Number of CDSs": "2253", "Average Protein Length": "311.0", "Coding Ratio (%)": "83.5", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella marshii", "strain": "strain=JCM 13450", "accession": "GCA_000613625.1", "taxid": 189722, "species_taxid": 189722, 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95, "status": "below_threshold" }, { "organism_name": "Prevotella maculosa", "strain": "strain=JCM 15638", "accession": "GCA_000613965.1", "taxid": 439703, "species_taxid": 439703, "relation_to_type": "type", "validated": true, "ani": 79.3553, "matched_fragments": 104, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella seregens", "strain": "strain=ATCC 51272", "accession": "GCA_000518545.1", "taxid": 52229, "species_taxid": 52229, "relation_to_type": "type", "validated": true, "ani": 78.9013, "matched_fragments": 97, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 78.7088, "matched_fragments": 114, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella 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840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 78.3592, "matched_fragments": 87, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella shahii", "strain": "strain=DSM 15611", "accession": "GCA_003201715.1", "taxid": 228603, "species_taxid": 228603, "relation_to_type": "type", "validated": true, "ani": 78.1219, "matched_fragments": 73, "total_fragments": 799, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000146675.1", "gtdb_species": "s__Prevotella marshii", "ani": 99.9656, "matched_fragments": 799, "total_fragments": 799, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", 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null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Hoylesella", "marshii", "DSM", "16973", "=", "JCM", "13450" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }