{
    "type": "genome",
    "identifier": "GCF_000613745.1",
    "organism": "Bacteroides propionicifaciens DSM 19291 = JCM 14649",
    "title": "Bacteroides propionicifaciens DSM 19291 = JCM 14649",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Tokyo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000613745.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00009459",
        "wgs_master": "BAJO00000000.1",
        "refseq_category": "na",
        "taxid": "1121099",
        "species_taxid": "392838",
        "organism_name": "Bacteroides propionicifaciens DSM 19291 = JCM 14649",
        "infraspecific_name": "strain=JCM 14649",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/03/31",
        "asm_name": "ASM61374v1",
        "asm_submitter": "The University of Tokyo",
        "gbrs_paired_asm": "GCA_000613745.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/613/745/GCF_000613745.1_ASM61374v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2625415",
        "genome_size_ungapped": "2625415",
        "gc_percent": "38.000000",
        "replicon_count": "0",
        "scaffold_count": "80",
        "contig_count": "80",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000613745.1-RS_2024_08_08",
        "annotation_date": "2024-08-08",
        "total_gene_count": "2323",
        "protein_coding_gene_count": "2071",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-03-31",
    "dateModified": "2014-03-31",
    "datePublished": "2014-03-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroides propionicifaciens DSM 19291 = JCM 14649"
        ],
        "sample_taxid": [
            "1121099"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.750 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2625415",
        "Number of Sequences": "80",
        "Longest Sequences (bp)": "184045",
        "N50 (bp)": "76324",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.0",
        "Number of CDSs": "2306",
        "Average Protein Length": "331.8",
        "Coding Ratio (%)": "87.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Bacteroides propionicifaciens",
                "strain": "strain=JCM 14649",
                "accession": "GCA_000613745.1",
                "taxid": 392838,
                "species_taxid": 392838,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 828,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacteroides propionicifaciens",
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                "accession": "GCA_000375405.1",
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                "species_taxid": 392838,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9765,
                "matched_fragments": 829,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacteroides coprosuis",
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                "accession": "GCA_000212915.1",
                "taxid": 151276,
                "species_taxid": 151276,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides luti",
                "strain": "strain=DSM 26991",
                "accession": "GCA_900128905.1",
                "taxid": 1297750,
                "species_taxid": 1297750,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7174,
                "matched_fragments": 56,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides caecimuris",
                "strain": "strain=I48",
                "accession": "GCA_016697125.1",
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                "species_taxid": 1796613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8897,
                "matched_fragments": 54,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides caecimuris",
                "strain": "strain=I48",
                "accession": "GCA_002221665.1",
                "taxid": 1796613,
                "species_taxid": 1796613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8869,
                "matched_fragments": 55,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides caecimuris",
                "strain": "strain=I48",
                "accession": "GCA_023277905.1",
                "taxid": 1796613,
                "species_taxid": 1796613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8326,
                "matched_fragments": 58,
                "total_fragments": 836,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000375405.1",
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                "matched_fragments": 829,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000212915.1",
                "gtdb_species": "s__Bacteroides_E coprosuis",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900128905.1",
                "gtdb_species": "s__Bacteroides_G luti",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides_G",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001688725.2",
                "gtdb_species": "s__Bacteroides caecimuris",
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                "matched_fragments": 54,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.14",
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                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.68",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_009193295.2",
                "gtdb_species": "s__Bacteroides luhongzhouii",
                "ani": 76.8031,
                "matched_fragments": 52,
                "total_fragments": 836,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "98.73",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.14,
        "cell_length": 0.176,
        "doubling_h": -0.095,
        "growth_tmp": 34.0,
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        "optimum_ph": 7.9,
        "genome_size": 2632258.0,
        "gc_content": 38.0,
        "coding_genes": 3969.717,
        "rRNA16S_genes": 5.5,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Bacteroides",
        "propionicifaciens",
        "DSM",
        "19291",
        "=",
        "JCM",
        "14649"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}