{ "type": "genome", "identifier": "GCF_000613945.1", "organism": "Prevotella falsenii DSM 22864 = JCM 15124", "title": "Prevotella falsenii DSM 22864 = JCM 15124", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000613945.1", "bioproject": "PRJNA224116", "biosample": "SAMD00004645", "wgs_master": "BAJY00000000.1", "refseq_category": "reference genome", "taxid": "1122983", "species_taxid": "515414", "organism_name": "Prevotella falsenii DSM 22864 = JCM 15124", "infraspecific_name": "strain=JCM 15124", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/03/31", "asm_name": "ASM61394v1", "asm_submitter": "The University of Tokyo", "gbrs_paired_asm": "GCA_000613945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/613/945/GCF_000613945.1_ASM61394v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2800241", "genome_size_ungapped": "2800241", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "92", "contig_count": "92", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000613945.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "2439", "protein_coding_gene_count": "2125", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-03-31", "dateModified": "2014-03-31", "datePublished": "2014-03-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella falsenii DSM 22864 = JCM 15124" ], "sample_taxid": [ "1122983" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.795 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2800241", "Number of Sequences": "92", "Longest Sequences (bp)": "241234", "N50 (bp)": "80352", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.0", "Number of CDSs": "2374", "Average Protein Length": "319.4", "Coding Ratio (%)": "81.2", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella falsenii", "strain": "strain=JCM 15124", "accession": "GCA_000613945.1", "taxid": 515414, "species_taxid": 515414, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 887, "total_fragments": 889, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella intermedia", "strain": "strain=NCTC13070", "accession": "GCA_900455005.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 90.1689, "matched_fragments": 699, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_001953955.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 90.138, "matched_fragments": 713, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 90.1089, "matched_fragments": 700, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=DSM 20706", "accession": "GCA_000439065.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 90.0874, "matched_fragments": 709, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=FDAARGOS_1486", "accession": "GCA_019930605.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 83.9468, "matched_fragments": 580, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 76.9101, "matched_fragments": 58, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000613945.1", "gtdb_species": "s__Prevotella falsenii", "ani": 100.0, "matched_fragments": 887, "total_fragments": 889, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001953955.1", "gtdb_species": "s__Prevotella intermedia", "ani": 90.1249, "matched_fragments": 713, "total_fragments": 889, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.61", "min_intra_species_ani": "96.13", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 34, "status": "-" }, { "accession": "GCF_000220235.1", "gtdb_species": "s__Prevotella nigrescens", "ani": 83.9474, "matched_fragments": 568, "total_fragments": 889, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "97.70", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.78", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_000614025.1", "gtdb_species": "s__Prevotella aurantiaca", "ani": 82.2137, "matched_fragments": 552, "total_fragments": 889, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000220255.1", "gtdb_species": "s__Prevotella pallens", "ani": 79.8155, "matched_fragments": 452, "total_fragments": 889, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "96.89", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 40, "status": "-" }, { "accession": "GCF_900155655.1", "gtdb_species": "s__Prevotella ihumii", "ani": 79.3064, "matched_fragments": 272, "total_fragments": 889, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001262015.1", "gtdb_species": "s__Prevotella fusca", "ani": 78.9037, "matched_fragments": 130, "total_fragments": 889, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000688375.1", "gtdb_species": "s__Prevotella sp000688375", "ani": 78.6124, "matched_fragments": 236, "total_fragments": 889, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002440225.1", "gtdb_species": "s__Prevotella sp002440225", "ani": 76.288, "matched_fragments": 54, 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Prevotella", "falsenii", "DSM", "22864", "=", "JCM", "15124" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }