{ "type": "genome", "identifier": "GCF_000614065.1", "organism": "Prevotella dentasini JCM 15908", "title": "Prevotella dentasini JCM 15908", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Tokyo", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000614065.1", "bioproject": "PRJNA224116", "biosample": "SAMD00015869", "wgs_master": "BAKG00000000.1", "refseq_category": "reference genome", "taxid": "1236509", "species_taxid": "589537", "organism_name": "Prevotella dentasini JCM 15908", "infraspecific_name": "strain=JCM 15908", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/03/31", "asm_name": "ASM61406v1", "asm_submitter": "The University of Tokyo", "gbrs_paired_asm": "GCA_000614065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/614/065/GCF_000614065.1_ASM61406v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2546609", "genome_size_ungapped": "2546609", "gc_percent": "50.500000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000614065.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "2191", "protein_coding_gene_count": "1747", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-03-31", "dateModified": "2014-03-31", "datePublished": "2014-03-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella dentasini JCM 15908" ], "sample_taxid": [ "1236509" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.726 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.79, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2546609", "Number of Sequences": "41", "Longest Sequences (bp)": "197911", "N50 (bp)": "104092", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.6", "Number of CDSs": "2382", "Average Protein Length": "289.4", "Coding Ratio (%)": "81.2", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella dentasini", "strain": "strain=JCM 15908", "accession": "GCA_000614065.1", "taxid": 589537, "species_taxid": 589537, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 829, "total_fragments": 830, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella oulorum", "strain": "strain=ATCC 43324", "accession": "GCA_900167385.1", "taxid": 28136, "species_taxid": 28136, "relation_to_type": "type", "validated": true, "ani": 80.0619, "matched_fragments": 71, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella falsenii", "strain": "strain=JCM 15124", "accession": "GCA_000613945.1", "taxid": 515414, "species_taxid": 515414, "relation_to_type": "type", "validated": true, "ani": 79.3158, "matched_fragments": 134, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=FDAARGOS_1486", "accession": "GCA_019930605.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 79.0428, "matched_fragments": 117, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=NCTC9336", "accession": "GCA_900454985.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 78.9415, "matched_fragments": 120, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=ATCC 33563", "accession": "GCA_000220235.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 78.8602, "matched_fragments": 119, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella jejuni", "strain": "strain=DSM 26989", "accession": "GCA_900187995.1", "taxid": 1177574, "species_taxid": 1177574, "relation_to_type": "type", "validated": true, "ani": 78.8404, "matched_fragments": 112, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella melaninogenica", "strain": "strain=ATCC 25845", "accession": "GCA_000144405.1", "taxid": 28132, "species_taxid": 28132, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6963, "matched_fragments": 110, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella melaninogenica", "strain": "strain=FDAARGOS_1566", "accession": "GCA_020735785.1", "taxid": 28132, "species_taxid": 28132, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6384, "matched_fragments": 111, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella seregens", "strain": "strain=ATCC 51272", "accession": "GCA_000518545.1", "taxid": 52229, "species_taxid": 52229, "relation_to_type": "type", "validated": true, "ani": 78.6152, "matched_fragments": 137, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella denticola", "strain": "strain=NCTC13067", "accession": "GCA_900454835.1", "taxid": 28129, "species_taxid": 28129, "relation_to_type": "type", "validated": true, "ani": 78.4539, "matched_fragments": 216, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella denticola", "strain": "strain=DSM 20614", "accession": "GCA_000421205.1", "taxid": 28129, "species_taxid": 28129, "relation_to_type": "type", "validated": true, "ani": 78.3981, "matched_fragments": 214, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_001262015.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 78.3813, "matched_fragments": 166, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_018128145.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 78.3195, "matched_fragments": 164, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=DSM 20706", "accession": "GCA_000439065.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 78.0604, "matched_fragments": 137, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella multiformis", "strain": "strain=DSM 16608", "accession": "GCA_000191065.1", "taxid": 282402, "species_taxid": 282402, "relation_to_type": "type", "validated": true, "ani": 78.0552, "matched_fragments": 234, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 77.9727, "matched_fragments": 137, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lacticifex", "strain": "strain=R5019", "accession": "GCA_019973375.1", "taxid": 2854755, "species_taxid": 2854755, "relation_to_type": "type", "validated": true, "ani": 76.8439, "matched_fragments": 120, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8017, "matched_fragments": 81, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella mizrahii", "strain": "strain=LKV-178-WT-2A", "accession": "GCA_009695775.1", "taxid": 2606637, "species_taxid": 2606637, "relation_to_type": "type", "validated": true, "ani": 76.7193, "matched_fragments": 81, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.79, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000614065.1", "gtdb_species": "s__Prevotella dentasini", "ani": 100.0, "matched_fragments": 829, "total_fragments": 830, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000688375.1", "gtdb_species": "s__Prevotella sp000688375", "ani": 79.3519, "matched_fragments": 210, "total_fragments": 830, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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