{
    "type": "genome",
    "identifier": "GCF_000614895.1",
    "organism": "Marinilabilia salmonicolor JCM 21150",
    "title": "Marinilabilia salmonicolor JCM 21150",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Tokyo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000614895.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00012206",
        "wgs_master": "BALK00000000.1",
        "refseq_category": "na",
        "taxid": "1168289",
        "species_taxid": "989",
        "organism_name": "Marinilabilia salmonicolor JCM 21150",
        "infraspecific_name": "strain=JCM 21150",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/03/31",
        "asm_name": "ASM61489v1",
        "asm_submitter": "The University of Tokyo",
        "gbrs_paired_asm": "GCA_000614895.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/614/895/GCF_000614895.1_ASM61489v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4971544",
        "genome_size_ungapped": "4971544",
        "gc_percent": "42.000000",
        "replicon_count": "0",
        "scaffold_count": "105",
        "contig_count": "105",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000614895.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "4411",
        "protein_coding_gene_count": "4222",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-03-31",
    "dateModified": "2014-03-31",
    "datePublished": "2014-03-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Marinilabilia salmonicolor JCM 21150"
        ],
        "sample_taxid": [
            "1168289"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.414 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4971544",
        "Number of Sequences": "105",
        "Longest Sequences (bp)": "667403",
        "N50 (bp)": "113118",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.9",
        "Number of CDSs": "4320",
        "Average Protein Length": "321.0",
        "Coding Ratio (%)": "83.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1602,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Marinilabilia salmonicolor",
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                "validated": true,
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                "matched_fragments": 1595,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
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                "organism_name": "Marinilabilia rubra",
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                "species_taxid": 2162893,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerophaga thermohalophila",
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                "accession": "GCA_000191885.2",
                "taxid": 177400,
                "species_taxid": 177400,
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                "ani": 77.2069,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Thermophagus xiamenensis",
                "strain": "strain=DSM 19012",
                "accession": "GCA_900112795.1",
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                "species_taxid": 385682,
                "relation_to_type": "type",
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                "ani": 76.8969,
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                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermophagus xiamenensis",
                "strain": "strain=HS1",
                "accession": "GCA_000220155.2",
                "taxid": 385682,
                "species_taxid": 385682,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8681,
                "matched_fragments": 129,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geofilum rhodophaeum",
                "strain": "strain=HF401",
                "accession": "GCA_002210225.1",
                "taxid": 1965019,
                "species_taxid": 1965019,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3005,
                "matched_fragments": 65,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Carboxylicivirga mesophila",
                "strain": "strain=JCM 18290",
                "accession": "GCA_018271975.1",
                "taxid": 1166478,
                "species_taxid": 1166478,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Carboxylicivirga sediminis",
                "strain": "strain=JR1",
                "accession": "GCA_018156225.1",
                "taxid": 2006564,
                "species_taxid": 2006564,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 63,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Carboxylicivirga linearis",
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                "accession": "GCA_018271995.1",
                "taxid": 1628157,
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                "relation_to_type": "type",
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                "matched_fragments": 58,
                "total_fragments": 1609,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000259075.1",
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                "total_fragments": 1609,
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                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003003035.1",
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                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_002411085.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_016278715.1",
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                "matched_fragments": 717,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Marinilabilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_003121985.1",
                "gtdb_species": "s__Marinilabilia rubra",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.523,
        "cell_length": 0.301,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 32.5,
        "optimum_ph": 7.0,
        "genome_size": 4886574.5,
        "gc_content": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Marinilabilia",
        "salmonicolor",
        "JCM",
        "21150"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}