{
    "type": "genome",
    "identifier": "GCF_000615005.1",
    "organism": "Shewanella putrefaciens JCM 20190 = NBRC 3908",
    "title": "Shewanella putrefaciens JCM 20190 = NBRC 3908",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Tokyo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000615005.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00004020",
        "wgs_master": "BALN00000000.1",
        "refseq_category": "na",
        "taxid": "1236543",
        "species_taxid": "24",
        "organism_name": "Shewanella putrefaciens JCM 20190 = NBRC 3908",
        "infraspecific_name": "strain=JCM 20190",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/03/31",
        "asm_name": "ASM61500v1",
        "asm_submitter": "The University of Tokyo",
        "gbrs_paired_asm": "GCA_000615005.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/615/005/GCF_000615005.1_ASM61500v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4327984",
        "genome_size_ungapped": "4327984",
        "gc_percent": "44.500000",
        "replicon_count": "0",
        "scaffold_count": "49",
        "contig_count": "49",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000615005.1-RS_2024_07_06",
        "annotation_date": "2024-07-06",
        "total_gene_count": "3886",
        "protein_coding_gene_count": "3171",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-03-31",
    "dateModified": "2014-03-31",
    "datePublished": "2014-03-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Shewanella putrefaciens JCM 20190 = NBRC 3908"
        ],
        "sample_taxid": [
            "1236543"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.238 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4327984",
        "Number of Sequences": "49",
        "Longest Sequences (bp)": "520806",
        "N50 (bp)": "154992",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.3",
        "Number of CDSs": "4303",
        "Average Protein Length": "286.1",
        "Coding Ratio (%)": "85.3",
        "Number of rRNAs": "5",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Shewanella putrefaciens",
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                "species_taxid": 24,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Shewanella putrefaciens",
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                "validated": true,
                "ani": 99.941,
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            },
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            },
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                "organism_name": "Shewanella profunda",
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                "accession": "GCA_023283765.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella oncorhynchi",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella hafniensis",
                "strain": "strain=ATCC BAA-1207",
                "accession": "GCA_019655335.1",
                "taxid": 365590,
                "species_taxid": 365590,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "accession": "GCA_900456975.1",
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                "species_taxid": 62322,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella glacialipiscicola",
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            },
            {
                "organism_name": "Shewanella oneidensis",
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                "accession": "GCA_013267215.1",
                "taxid": 70863,
                "species_taxid": 70863,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella decolorationis",
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                "relation_to_type": "type",
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                "ani": 81.6751,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella seohaensis",
                "strain": "strain=CCUG 60900",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella seohaensis",
                "strain": "strain=KCTC 23556",
                "accession": "GCA_025449215.1",
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                "ani": 81.3266,
                "matched_fragments": 887,
                "total_fragments": 1415,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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                "accession": "GCF_016406325.1",
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                "mean_intra_species_ani": "N/A",
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            {
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    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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}