{
    "type": "genome",
    "identifier": "GCF_000615285.1",
    "organism": "Lactobacillus kitasatonis DSM 16761 = JCM 1039",
    "title": "Lactobacillus kitasatonis DSM 16761 = JCM 1039",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Tokyo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000615285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00016339",
        "wgs_master": "BALU00000000.1",
        "refseq_category": "na",
        "taxid": "1423767",
        "species_taxid": "237446",
        "organism_name": "Lactobacillus kitasatonis DSM 16761 = JCM 1039",
        "infraspecific_name": "strain=JCM 1039",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/03/31",
        "asm_name": "ASM61528v1",
        "asm_submitter": "The University of Tokyo",
        "gbrs_paired_asm": "GCA_000615285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/615/285/GCF_000615285.1_ASM61528v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1902496",
        "genome_size_ungapped": "1902496",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "35",
        "contig_count": "35",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000615285.1-RS_2024_09_09",
        "annotation_date": "2024-09-09",
        "total_gene_count": "1978",
        "protein_coding_gene_count": "1670",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-03-31",
    "dateModified": "2014-03-31",
    "datePublished": "2014-03-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactobacillus kitasatonis DSM 16761 = JCM 1039"
        ],
        "sample_taxid": [
            "1423767"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.538 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1902496",
        "Number of Sequences": "35",
        "Longest Sequences (bp)": "228445",
        "N50 (bp)": "108409",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.5",
        "Number of CDSs": "2067",
        "Average Protein Length": "269.5",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Lactobacillus kitasatonis",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus kitasatonis",
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                "ani": 99.9846,
                "matched_fragments": 617,
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            },
            {
                "organism_name": "Lactobacillus amylovorus",
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                "species_taxid": 1604,
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                "status": "below_threshold"
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            {
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                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus gallinarum",
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                "accession": "GCA_001434975.1",
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                "species_taxid": 52242,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus ultunensis",
                "strain": "strain=DSM 16047",
                "accession": "GCA_001436305.1",
                "taxid": 227945,
                "species_taxid": 227945,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus helveticus",
                "strain": "strain=CGMCC 1.1877",
                "accession": "GCA_001434945.1",
                "taxid": 1587,
                "species_taxid": 1587,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3118,
                "matched_fragments": 319,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus acidophilus",
                "strain": "strain=ATCC 4356",
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                "species_taxid": 1579,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus huangpiensis",
                "strain": "strain=F306-1",
                "accession": "GCA_019972815.1",
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                "species_taxid": 2799571,
                "relation_to_type": "type",
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                "ani": 78.2528,
                "matched_fragments": 93,
                "total_fragments": 620,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_000615285.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus",
                "ani_circumscription_radius": 95.0,
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                "mean_intra_species_ani": "97.43",
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                "num_clustered_genomes": 24,
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            },
            {
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                "num_clustered_genomes": 17,
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            {
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            },
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                "accession": "GCF_004009905.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": 0.301,
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    "_genome_taxon": [
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        "DSM",
        "16761",
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        "1039"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}