# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_6	LOCUS_00020	sequence05:1..720(+)	partial			WP_002287941.1	IS256-like element ISEfm2 family transposase	99.6	60.5	52.1
MGA_12	LOCUS_00060	sequence11:209..592(-)	frameshift		614	WP_011254604.1	RNA-guided endonuclease TnpB family protein	93.7	40.1	83.2
MGA_13	LOCUS_00070	sequence11:594..>1122(-)	frameshift		614	WP_011254604.1	RNA-guided endonuclease TnpB family protein	76.6	44.1	46.3
MGA_22	LOCUS_00130	sequence17:274..>1677(-)	frameshift		291	WP_011254026.1	IS1182 family transposase	98.7	81.2	89.2
MGA_32	LOCUS_00210	sequence22:1797..2216(-)	frameshift		2212	WP_011241731.1	ParA family protein	96.4	50.2	45.9
MGA_33	LOCUS_00220	sequence22:2108..2593(-)	frameshift		2212	WP_011241731.1	ParA family protein	95.0	55.8	47.1
MGA_37	LOCUS_00250	sequence23:1693..2961(+)	partial			WP_000145511.1	replication initiation protein	50.9	73.1	30.4
MGA_45	LOCUS_00300	sequence26:2079..4079(-)	partial			WP_011254532.1	surface protein	62.0	58.4	31.9
MGA_63	LOCUS_00480	sequence30:3070..4275(+)	partial			WP_003546206.1	SEC10/PgrA surface exclusion domain-containing protein	58.4	69.3	34.4
MGA_65	LOCUS_00500	sequence30:5011..>6763(-)	partial			WP_011254065.1	pore-forming S-layer protein SlpA	51.5	71.2	33.0
MGA_88	LOCUS_00720	sequence34:1130..1450(+)	frameshift		1438	WP_011476453.1	alpha/beta hydrolase	82.1	38.2	58.6
MGA_89	LOCUS_00730	sequence34:1512..1850(+)	frameshift		1438	WP_011476453.1	alpha/beta hydrolase	99.1	48.7	57.7
MGA_96	LOCUS_00800	sequence34:6178..7209(+)	partial			WP_011476405.1	C39 family peptidase	71.1	27.9	45.8
MGA_102	LOCUS_00860	sequence36:491..1105(-)	frameshift		1131	WP_087236515.1	KUP/HAK/KT family potassium transporter	99.5	30.2	92.1
MGA_103	LOCUS_00870	sequence36:1090..2526(-)	frameshift		1131	WP_087236515.1	KUP/HAK/KT family potassium transporter	96.0	67.8	80.2
MGA_112	LOCUS_00960	sequence37:1226..1390(-)	partial			WP_013227318.1	alpha/beta hydrolase	98.1	58.2	47.2
MGA_115	LOCUS_00990	sequence37:3118..4200(+)	frameshift		2959	WP_011254005.1	DUF2974 domain-containing protein	88.9	78.4	67.8
MGA_121	LOCUS_01050	sequence37:7808..>9260(-)	partial			WP_003549345.1	DHH family phosphoesterase	100.0	71.8	89.9
MGA_122	LOCUS_01060	sequence38:458..1513(-)	frameshift		499,364	WP_003547770.1	cardiolipin synthase	96.3	68.5	71.2
MGA_126	LOCUS_01100	sequence38:5331..5816(-)	frameshift		5932	WP_003546959.1	phosphopyruvate hydratase	100.0	37.6	92.5
MGA_127	LOCUS_01110	sequence38:5771..6616(-)	frameshift		5932	WP_003546959.1	phosphopyruvate hydratase	81.1	53.3	89.0
MGA_133	LOCUS_01170	sequence39:2420..2899(-)	frameshift		2475,2949	WP_003547162.1	dipeptidase PepV	88.7	30.4	84.5
MGA_134	LOCUS_01180	sequence39:2926..3747(-)	frameshift		2949	WP_003547162.1	dipeptidase PepV	97.1	56.7	84.2
MGA_142	LOCUS_01260	sequence39:9656..10480(-)	frameshift,internal_stop_codon	10632..10634(-)	10619	WP_014565583.1	NAD(P)/FAD-dependent oxidoreductase	100.0	82.8	63.1
MGA_159	LOCUS_01430	sequence41:3198..3710(+)	frameshift		3665	WP_003548795.1	beta-N-acetylglucosaminidase AcmB	91.2	37.9	58.7
MGA_160	LOCUS_01440	sequence41:3707..4417(+)	frameshift		3665	WP_003548795.1	beta-N-acetylglucosaminidase AcmB	98.7	58.2	57.7
MGA_176	LOCUS_01600	sequence42:8381..9055(-)	frameshift		9093	WP_011254379.1	PhoH family protein	97.8	68.7	92.2
MGA_177	LOCUS_01610	sequence42:9052..9354(-)	frameshift		9093	WP_011254379.1	PhoH family protein	87.0	27.3	79.3
MGA_184	LOCUS_01680	sequence43:2430..2579(-)	frameshift		2578	WP_021721394.1	C39 family peptidase	98.0	20.3	68.8
MGA_185	LOCUS_01690	sequence43:2564..3163(-)	frameshift		2578	WP_021721394.1	C39 family peptidase	93.5	78.9	61.2
MGA_207	LOCUS_01910	sequence44:9216..9533(+)	frameshift		9518	WP_003549578.1	aspartate--ammonia ligase	95.2	29.8	88.0
MGA_208	LOCUS_01920	sequence44:9530..10225(+)	frameshift		9518	WP_003549578.1	aspartate--ammonia ligase	100.0	68.8	86.6
MGA_229	LOCUS_02120	sequence46:7421..7897(-)	frameshift		7958	WP_003546645.1	glycerate kinase	98.1	39.9	63.9
MGA_230	LOCUS_02130	sequence46:7902..8549(-)	frameshift		7958	WP_010905594.1	glycerate kinase	98.1	55.3	56.8
MGA_231	LOCUS_02140	sequence46:8802..9980(-)	partial			WP_003549857.1	BspA family leucine-rich repeat surface protein	45.4	10.8	28.1
MGA_232	LOCUS_02150	sequence46:9968..11221(-)	partial			WP_000610259.1	MSCRAMM family adhesin SdrE	40.0	14.8	28.3
MGA_233	LOCUS_02160	sequence46:11513..11776(-)	partial			WP_003642267.1	PTS sugar transporter subunit IIB	87.4	71.3	44.2
MGA_236	LOCUS_02190	sequence46:13648..14154(-)	partial			WP_003548795.1	beta-N-acetylglucosaminidase AcmB	83.3	34.7	36.9
MGA_255	LOCUS_02380	sequence48:4123..4884(-)	frameshift		4868	WP_003546985.1	HAD-IC family P-type ATPase	97.6	30.6	78.1
MGA_256	LOCUS_02390	sequence48:4788..6518(-)	frameshift		4868	WP_003546985.1	HAD-IC family P-type ATPase	95.5	68.9	75.0
MGA_265	LOCUS_02480	sequence49:2330..2626(+)	frameshift		2617	WP_025006378.1	pyrroline-5-carboxylate reductase	98.0	37.4	58.3
MGA_266	LOCUS_02490	sequence49:2932..3102(+)	partial			WP_103661284.1	pyrroline-5-carboxylate reductase	100.0	21.9	83.9
MGA_271	LOCUS_02540	sequence49:5083..5295(-)	frameshift		5330	WP_010921952.1	Gfo/Idh/MocA family oxidoreductase	65.7	14.4	54.3
MGA_272	LOCUS_02550	sequence49:5319..6059(-)	frameshift		5330	WP_011101851.1	Gfo/Idh/MocA family oxidoreductase	98.4	74.5	55.8
MGA_282	LOCUS_02650	sequence49:17349..17837(+)	partial			WP_003548787.1	hypothetical protein	34.0	38.3	49.1
MGA_283	LOCUS_02660	sequence49:17995..18195(+)	partial			WP_003594613.1	NAD(P)H-dependent oxidoreductase	97.0	32.7	70.3
MGA_289	LOCUS_02710	sequence50:37..8292(-)	partial			WP_003550047.1	LPXTG cell wall anchor domain-containing protein	12.4	27.6	26.1
MGA_290	LOCUS_02720	sequence50:8507..12451(-)	partial			WP_011254317.1	LPXTG cell wall anchor domain-containing protein	63.2	33.2	35.0
MGA_295	LOCUS_02770	sequence50:16367..16996(-)	partial			WP_091617684.1	transcriptional repressor LexA	58.9	50.0	42.7
MGA_304	LOCUS_02860	sequence51:423..713(-)	partial			WP_010774187.1	hypothetical protein	78.1	36.5	44.0
MGA_305	LOCUS_02870	sequence51:732..1355(-)	partial			WP_010905339.1	S24 family peptidase	59.4	45.0	32.8
MGA_312	LOCUS_02940	sequence51:7367..8230(-)	frameshift		8238	WP_011254350.1	GH25 family lysozyme	99.7	74.9	51.9
MGA_313	LOCUS_02950	sequence51:8227..8487(-)	frameshift		8238	WP_011254618.1	GH25 family lysozyme	89.5	23.8	54.5
MGA_341	LOCUS_03230	sequence52:20980..21153(-)	frameshift		21051	WP_003547047.1	sugar-phosphatase	71.9	15.2	75.6
MGA_343	LOCUS_03250	sequence52:22796..23362(-)	partial			WP_011475695.1	DUF4767 domain-containing protein	58.5	29.7	42.3
MGA_363	LOCUS_03440	sequence53:20983..21864(+)	frameshift		21828	WP_003547891.1	oligopeptide ABC transporter substrate-binding protein	97.3	48.6	58.4
MGA_364	LOCUS_03450	sequence53:22008..22733(+)	frameshift		21828	WP_011254413.1	oligopeptide ABC transporter substrate-binding protein	100.0	41.5	60.9
MGA_373	LOCUS_03540	sequence54:7254..8279(-)	frameshift		8290	WP_003549813.1	oligoendopeptidase F	99.4	56.7	85.8
MGA_374	LOCUS_03550	sequence54:8237..9049(-)	frameshift		8290	WP_003549813.1	oligoendopeptidase F	93.7	42.3	73.5
MGA_375	LOCUS_03560	sequence54:9213..10217(+)	frameshift		10130	WP_003549814.1	LCP family protein	91.6	71.5	79.7
MGA_376	LOCUS_03570	sequence54:10235..10435(+)	frameshift		10130	WP_003549814.1	LCP family protein	59.1	9.2	61.5
MGA_394	LOCUS_03750	sequence55:4947..5882(+)	internal_stop_codon	5880..5882(+)		WP_011254464.1	extracellular solute-binding protein	100.0	74.4	89.1
MGA_395	LOCUS_03760	sequence55:5934..6203(+)	internal_stop_codon	5880..5882(+)		WP_011254464.1	extracellular solute-binding protein	100.0	21.3	94.4
MGA_408	LOCUS_03890	sequence55:17401..17673(+)	frameshift		17616	WP_003549576.1	DsbA family oxidoreductase	98.9	41.0	76.4
MGA_409	LOCUS_03900	sequence55:17622..18059(+)	frameshift		17616	WP_003549576.1	DsbA family oxidoreductase	97.9	65.4	85.2
MGA_410	LOCUS_03910	sequence55:18071..18517(+)	partial			WP_010943415.1	OsmC family protein	74.3	59.7	32.4
MGA_437	LOCUS_04180	sequence56:15931..16923(-)	partial			WP_000444659.1	glycosyltransferase family 2 protein	61.5	72.1	33.5
MGA_439	LOCUS_04200	sequence56:18082..18822(-)	partial			WP_004081188.1	glycosyltransferase	83.3	51.5	34.6
MGA_440	LOCUS_04210	sequence56:18852..19226(-)	frameshift		18863	WP_002679065.1	glycosyltransferase	94.4	34.0	27.3
MGA_447	LOCUS_04280	sequence56:25006..25236(-)	frameshift		25327	WP_011254026.1	IS1182 family transposase	100.0	12.7	72.4
MGA_448	LOCUS_04290	sequence56:25310..>25936(-)	frameshift		25330	WP_011254026.1	IS1182 family transposase	59.6	21.8	93.5
MGA_487	LOCUS_04680	sequence58:10592..10900(+)	frameshift		10786	WP_003549630.1	extracellular solute-binding protein	76.5	18.4	72.5
MGA_488	LOCUS_04690	sequence58:10906..11811(+)	frameshift		10786	WP_003549630.1	extracellular solute-binding protein	100.0	73.8	91.0
MGA_500	LOCUS_04810	sequence58:25196..25837(-)	frameshift		25926	WP_003549671.1	L,D-transpeptidase family protein	99.5	54.0	75.6
MGA_501	LOCUS_04820	sequence58:25903..26496(-)	frameshift		25929	WP_003549671.1	L,D-transpeptidase family protein	76.6	37.6	60.9
MGA_513	LOCUS_04940	sequence59:10529..11155(-)	frameshift		11184	WP_003549506.1	cation:proton antiporter	100.0	53.5	84.6
MGA_514	LOCUS_04950	sequence59:11170..11697(-)	frameshift		11184	WP_003549506.1	cation:proton antiporter	99.4	44.7	89.1
MGA_519	LOCUS_05000	sequence59:16529..16681(+)	partial			WP_003706303.1	teichoic acid D-Ala incorporation-associated protein DltX	68.0	69.4	67.6
MGA_531	LOCUS_05120	sequence59:26394..28004(+)	frameshift		27971	WP_011254615.1	ATP-dependent Clp protease ATP-binding subunit	98.1	75.3	79.6
MGA_532	LOCUS_05130	sequence59:28007..28498(+)	frameshift		27971	WP_011254615.1	ATP-dependent Clp protease ATP-binding subunit	93.3	21.9	78.1
MGA_550	LOCUS_05300	sequence60:11335..12810(-)	frameshift		12911	WP_003546133.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	100.0	81.4	80.2
MGA_551	LOCUS_05310	sequence60:12858..13145(-)	frameshift		12911	WP_003546133.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	81.1	12.8	97.4
MGA_555	LOCUS_05350	sequence60:16554..17444(-)	frameshift		17545	WP_003546630.1	ABC transporter substrate-binding protein	99.7	82.6	80.0
MGA_576	LOCUS_05540	sequence61:1585..2430(+)	internal_stop_codon	2428..2430(+)		WP_004270929.1	IS30 family transposase	95.4	78.4	36.7
MGA_583	LOCUS_05610	sequence61:7468..7710(-)	partial			WP_014565478.1	SLAP domain-containing protein	81.2	17.2	60.0
MGA_584	LOCUS_05620	sequence61:7940..8698(-)	frameshift		8705,8754	WP_003548597.1	CPBP family intramembrane metalloprotease	96.8	48.0	26.2
MGA_589	LOCUS_05670	sequence61:12197..12961(-)	internal_stop_codon	13112..13114(-)		WP_003548575.1	ABC transporter ATP-binding protein	98.0	47.0	55.4
MGA_590	LOCUS_05680	sequence61:13112..13741(-)	internal_stop_codon	13112..13114(-)		WP_003548575.1	ABC transporter ATP-binding protein	99.0	39.1	44.4
MGA_593	LOCUS_05710	sequence61:14961..15191(-)	partial			WP_000571167.1	ABC transporter ATP-binding protein	100.0	35.7	50.0
MGA_594	LOCUS_05720	sequence61:15582..15725(-)	frameshift		15605	WP_005464459.1	Txe/YoeB family addiction module toxin	74.5	39.3	57.1
MGA_653	LOCUS_06300	sequence63:2482..2820(-)	frameshift		2939	WP_011254396.1	translation initiation factor IF-2	93.8	12.0	89.5
MGA_654	LOCUS_06310	sequence63:2874..5189(-)	frameshift		2939	WP_011254396.1	translation initiation factor IF-2	97.3	83.2	75.2
MGA_659	LOCUS_06360	sequence63:7625..9928(-)	frameshift		9927	WP_003547817.1	PolC-type DNA polymerase III	100.0	53.4	89.8
MGA_660	LOCUS_06370	sequence63:9925..11829(-)	frameshift		9927	WP_003547817.1	PolC-type DNA polymerase III	100.0	44.3	78.9
MGA_667	LOCUS_06440	sequence63:18077..19138(-)	frameshift		18082	WP_011254604.1	RNA-guided endonuclease TnpB family protein	53.3	63.3	75.0
MGA_699	LOCUS_06760	sequence64:11093..11509(+)	frameshift		11500	WP_000082559.1	SMP-30/gluconolactonase/LRE family protein	72.5	29.4	30.7
MGA_700	LOCUS_06770	sequence64:11494..12060(+)	frameshift		11500	WP_000082559.1	SMP-30/gluconolactonase/LRE family protein	96.8	56.3	49.2
MGA_716	LOCUS_06930	sequence64:26697..27515(-)	frameshift		27549	WP_003547194.1	PTS glucose transporter subunit IIABC	100.0	42.3	90.1
MGA_717	LOCUS_06940	sequence64:27508..28632(-)	frameshift		27549	WP_003547194.1	PTS glucose transporter subunit IIABC	96.5	55.8	85.0
MGA_734	LOCUS_07100	sequence65:5297..5572(-)	partial			WP_003562821.1	replication-associated recombination protein A	91.2	18.5	62.7
MGA_739	LOCUS_07150	sequence65:10480..10761(-)	frameshift		10832	WP_011254509.1	FMN-dependent dehydrogenase	98.9	27.1	72.8
MGA_740	LOCUS_07160	sequence65:10758..11489(-)	frameshift		10832	WP_011254509.1	FMN-dependent dehydrogenase	89.3	64.4	74.9
MGA_752	LOCUS_07280	sequence65:24186..24821(-)	partial			WP_010989346.1	alpha/beta hydrolase	97.6	56.3	27.3
MGA_757	LOCUS_07330	sequence65:26618..27064(+)	frameshift		26929,27292	WP_003550052.1	hypothetical protein	64.9	35.3	32.3
MGA_759	LOCUS_07350	sequence65:27985..28590(+)	partial			WP_011837231.1	TetR/AcrR family transcriptional regulator	48.8	53.2	34.6
MGA_762	LOCUS_07380	sequence65:30943..33933(-)	partial			WP_011254440.1	mucus-binding protein	18.0	18.1	29.7
MGA_763	LOCUS_07390	sequence65:33912..35300(-)	partial			WP_003548049.1	YSIRK-type signal peptide-containing protein	37.4	4.4	30.7
MGA_783	LOCUS_07580	sequence66:16397..17722(+)	frameshift		17719	WP_011254637.1	pyruvate oxidase	100.0	73.4	82.3
MGA_784	LOCUS_07590	sequence66:17719..18198(+)	frameshift		17719	WP_011254637.1	pyruvate oxidase	100.0	26.6	84.4
MGA_802	LOCUS_07770	sequence66:39722..39952(-)	frameshift		40014	WP_003549459.1	NCS2 family permease	100.0	17.5	81.6
MGA_803	LOCUS_07780	sequence66:39970..41028(-)	frameshift		40014	WP_003549459.1	NCS2 family permease	96.0	77.7	88.2
MGA_821	LOCUS_07960	sequence67:18028..18606(+)	frameshift		18531	WP_003548775.1	hypothetical protein	88.5	40.3	88.8
MGA_822	LOCUS_07970	sequence67:18531..19301(+)	frameshift		18531	WP_003548775.1	hypothetical protein	98.4	59.7	93.3
MGA_823	LOCUS_07980	sequence67:19520..22849(+)	partial			WP_011102047.1	MBG domain-containing protein	48.3	28.2	23.7
MGA_825	LOCUS_08000	sequence67:23719..24996(+)	partial			WP_005916172.1	PAS domain-containing protein	92.7	66.5	28.1
MGA_826	LOCUS_08010	sequence67:25140..38711(+)	partial			WP_013246158.1	MBG domain-containing protein	18.0	36.8	24.5
MGA_875	LOCUS_08500	sequence69:1..1096(+)	partial			WP_193363685.1	flavocytochrome c	95.9	61.1	80.5
MGA_881	LOCUS_08560	sequence69:5316..5540(-)	partial			WP_003562902.1	hypothetical protein	73.0	66.2	51.9
MGA_887	LOCUS_08620	sequence69:11613..12008(+)	frameshift		11924	WP_015613276.1	trypsin-like peptidase domain-containing protein	76.3	24.5	56.9
MGA_888	LOCUS_08630	sequence69:12005..12835(+)	frameshift		11924	WP_015613276.1	trypsin-like peptidase domain-containing protein	100.0	67.2	86.6
MGA_890	LOCUS_08650	sequence69:13801..14073(+)	frameshift		14043	WP_011254624.1	Rgg/GadR/MutR family transcriptional regulator	56.7	18.1	45.1
MGA_892	LOCUS_08670	sequence69:14851..15876(+)	partial			WP_003546245.1	SLAP domain-containing protein	86.8	63.1	35.3
MGA_895	LOCUS_08700	sequence69:17480..17986(-)	frameshift		18011	WP_003548607.1	energy-coupling factor transporter transmembrane component T	100.0	77.4	72.6
MGA_896	LOCUS_08710	sequence69:18118..19083(-)	frameshift		19082,19076	WP_003548609.1	ABC transporter ATP-binding protein	97.2	69.3	63.1
MGA_897	LOCUS_08720	sequence69:19041..19496(-)	frameshift		19082,19076	WP_003548609.1	ABC transporter ATP-binding protein	89.4	29.8	68.1
MGA_909	LOCUS_08840	sequence69:29555..30361(-)	frameshift		30417	WP_011254042.1	ABC transporter substrate-binding protein/permease	100.0	49.9	92.2
MGA_910	LOCUS_08850	sequence69:30412..31167(-)	frameshift		30417	WP_011254042.1	ABC transporter substrate-binding protein/permease	99.2	46.4	90.0
MGA_940	LOCUS_09140	sequence70:9341..9685(+)	partial			WP_011020466.1	cyclophilin-like fold protein	99.1	37.4	51.3
MGA_957	LOCUS_09310	sequence70:23986..25161(+)	frameshift		25044	WP_003546396.1	ABC transporter ATP-binding protein	87.5	58.5	80.4
MGA_958	LOCUS_09320	sequence70:25086..25745(+)	frameshift		25050	WP_003546396.1	ABC transporter ATP-binding protein	100.0	37.4	87.7
MGA_962	LOCUS_09360	sequence70:28024..29016(+)	frameshift		28869	WP_003546457.1	thiolase family protein	89.7	76.6	67.9
MGA_963	LOCUS_09370	sequence70:28992..29186(+)	frameshift		28869	WP_003546457.1	thiolase family protein	95.3	15.8	73.8
MGA_983	LOCUS_09570	sequence71:658..2067(-)	frameshift		2117	WP_003547786.1	single-stranded-DNA-specific exonuclease RecJ	99.4	61.6	74.5
MGA_984	LOCUS_09580	sequence71:2088..2927(-)	frameshift		2117	WP_003547786.1	single-stranded-DNA-specific exonuclease RecJ	96.4	35.5	83.3
MGA_987	LOCUS_09610	sequence71:4158..4730(-)	partial			WP_013389917.1	GH25 family lysozyme	76.8	41.2	41.5
MGA_993	LOCUS_09670	sequence71:9142..9630(-)	partial			WP_000106741.1	DUF2634 domain-containing protein	51.9	62.1	39.3
MGA_996	LOCUS_09700	sequence71:11104..11793(-)	partial			WP_012047652.1	LysM peptidoglycan-binding domain-containing protein	57.6	59.6	33.6
MGA_997	LOCUS_09710	sequence71:11812..14811(-)	partial			WP_010922222.1	tape measure protein	53.9	44.3	34.0
MGA_1003	LOCUS_09770	sequence71:17925..18326(-)	partial			WP_012047645.1	HK97 gp10 family phage protein	78.9	62.6	35.2
MGA_1010	LOCUS_09840	sequence71:21104..22684(-)	partial			WP_002485350.1	minor capsid protein	57.4	65.8	23.4
MGA_1024	LOCUS_09980	sequence71:30920..31540(-)	partial			WP_057803058.1	ATP-binding protein	96.1	71.5	43.4
MGA_1036	LOCUS_10100	sequence71:36492..37298(+)	partial			WP_011475904.1	Ltp family lipoprotein	39.6	49.1	56.6
MGA_1046	LOCUS_10200	sequence72:832..1554(+)	frameshift		1521	WP_003547513.1	tyrosine recombinase XerS	96.2	64.5	80.5
MGA_1047	LOCUS_10210	sequence72:1656..1907(+)	frameshift		1521	WP_003547513.1	tyrosine recombinase XerS	97.6	22.6	85.2
MGA_1051	LOCUS_10250	sequence72:5262..5522(-)	frameshift		5578	WP_011254355.1	carbamoyl phosphate synthase large subunit	100.0	8.1	84.9
MGA_1070	LOCUS_10440	sequence72:24383..25870(-)	frameshift		26007	WP_011254365.1	helicase C-terminal domain-containing protein	99.2	53.0	70.1
MGA_1071	LOCUS_10450	sequence72:25900..27174(-)	frameshift		26007	WP_011254365.1	helicase C-terminal domain-containing protein	92.5	42.2	77.0
MGA_1084	LOCUS_10580	sequence72:43729..44022(-)	frameshift,internal_stop_codon	43545..43547(-)	43746	WP_011254026.1	IS1182 family transposase	75.3	13.6	80.5
MGA_1085	LOCUS_10590	sequence72:44175..44504(-)	partial			WP_003549609.1	YxeA family protein	77.1	64.6	53.6
MGA_1089	LOCUS_10630	sequence72:47660..48481(-)	partial			WP_003549642.1	helix-turn-helix transcriptional regulator	68.9	69.1	34.2
MGA_1090	LOCUS_10640	sequence72:48632..48778(-)	partial			WP_003549127.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	100.0	13.8	93.8
MGA_1091	LOCUS_10650	sequence72:48895..49065(-)	partial			WP_003549114.1	YaaL family protein	100.0	70.9	83.9
MGA_1100	LOCUS_10740	sequence72:55355..55477(+)	internal_stop_codon	55127..55129(+)		WP_003547614.1	8-oxo-dGTP diphosphatase	100.0	27.4	72.5
MGA_1112	LOCUS_10850	sequence73:11941..15372(-)	partial			WP_011254440.1	mucus-binding protein	37.5	43.9	33.3
MGA_1113	LOCUS_10860	sequence73:15510..15737(-)	partial			WP_003548049.1	YSIRK-type signal peptide-containing protein	96.0	1.6	41.7
MGA_1114	LOCUS_10870	sequence73:15900..21371(-)	partial			WP_003549857.1	BspA family leucine-rich repeat surface protein	23.5	30.2	29.1
MGA_1118	LOCUS_10910	sequence73:27238..30771(-)	partial			WP_007058870.1	DEAD/DEAH box helicase	62.9	59.3	36.7
MGA_1120	LOCUS_10930	sequence73:31587..32102(+)	frameshift		32099	WP_003547024.1	ABC transporter ATP-binding protein	98.2	29.7	77.4
MGA_1121	LOCUS_10940	sequence73:32237..33292(+)	frameshift		32099	WP_003547024.1	ABC transporter ATP-binding protein	99.1	61.5	71.8
MGA_1125	LOCUS_10980	sequence73:37601..39007(-)	partial			WP_011674363.1	alpha-galactosidase	98.7	61.2	54.6
MGA_1126	LOCUS_10990	sequence73:39340..39822(-)	frameshift		39363	WP_011674363.1	alpha-galactosidase	95.6	19.8	42.5
MGA_1131	LOCUS_11040	sequence73:43482..43628(+)	partial			WP_003548138.1	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	83.3	10.8	82.5
MGA_1135	LOCUS_11080	sequence73:47908..48741(-)	internal_stop_codon	48787..48789(-)		WP_000573446.1	alpha/beta fold hydrolase	89.2	75.7	38.3
MGA_1137	LOCUS_11100	sequence73:49714..52236(-)	partial			WP_003242572.1	beta-galactosidase YesZ	61.4	77.7	38.0
MGA_1140	LOCUS_11130	sequence73:54660..55268(-)	partial			WP_002263162.1	TetR/AcrR family transcriptional regulator	36.6	39.4	35.1
MGA_1159	LOCUS_11320	sequence74:19269..20420(+)	frameshift		20405	WP_003548440.1	PBP1A family penicillin-binding protein	98.4	54.5	82.2
MGA_1160	LOCUS_11330	sequence74:20417..21331(+)	frameshift		20405	WP_003548440.1	PBP1A family penicillin-binding protein	99.7	44.2	83.8
MGA_1173	LOCUS_11460	sequence74:32093..33211(+)	frameshift		33202	WP_003548413.1	UDP-N-acetylmuramate--L-alanine ligase	99.5	84.7	93.2
MGA_1174	LOCUS_11470	sequence74:33265..33405(+)	frameshift		33202	WP_003548413.1	UDP-N-acetylmuramate--L-alanine ligase	100.0	10.5	91.3
MGA_1178	LOCUS_11510	sequence74:37599..37859(+)	frameshift		37739	WP_003548345.1	transcriptional regulator NrdR	61.6	34.2	88.7
MGA_1179	LOCUS_11520	sequence74:37745..38068(+)	frameshift		37739	WP_003548345.1	transcriptional regulator NrdR	99.1	68.4	91.5
MGA_1216	LOCUS_11890	sequence75:15820..16002(-)	frameshift		16085	WP_003548996.1	alanine racemase	98.3	15.7	86.4
MGA_1217	LOCUS_11900	sequence75:16044..16949(-)	frameshift		16085	WP_003548996.1	alanine racemase	95.3	76.3	80.5
MGA_1220	LOCUS_11930	sequence75:18894..19109(-)	frameshift		19135	WP_003548990.1	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase	100.0	15.6	74.6
MGA_1221	LOCUS_11940	sequence75:19106..20260(-)	frameshift		19135	WP_003548990.1	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase	97.4	82.2	87.7
MGA_1241	LOCUS_12140	sequence75:41016..41252(-)	frameshift		41266,41269	WP_011254086.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	97.4	17.6	84.2
MGA_1242	LOCUS_12150	sequence75:41213..42316(-)	frameshift		41266,41269	WP_011254086.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	97.8	83.8	92.8
MGA_1251	LOCUS_12240	sequence75:51608..52309(-)	partial			WP_003548886.1	SLAP domain-containing protein	92.3	42.6	24.6
MGA_1273	LOCUS_12460	sequence76:3814..4569(-)	frameshift		4598	WP_003547883.1	signal recognition particle-docking protein FtsY	100.0	58.2	89.2
MGA_1274	LOCUS_12470	sequence76:4578..5174(-)	frameshift		4598	WP_003547883.1	signal recognition particle-docking protein FtsY	96.5	39.2	35.6
MGA_1302	LOCUS_12750	sequence76:36978..37691(-)	frameshift		37708	WP_003547935.1	polyprenyl synthetase family protein	100.0	82.0	82.7
MGA_1303	LOCUS_12760	sequence76:37679..37846(-)	frameshift		37708	WP_003547935.1	polyprenyl synthetase family protein	83.6	15.9	67.4
MGA_1308	LOCUS_12810	sequence76:40736..40894(-)	frameshift		40893	WP_003547946.1	Asp23/Gls24 family envelope stress response protein	96.2	34.7	64.0
MGA_1309	LOCUS_12820	sequence76:40873..41166(-)	frameshift		40893	WP_003547946.1	Asp23/Gls24 family envelope stress response protein	99.0	66.7	75.0
MGA_1311	LOCUS_12840	sequence76:41817..42263(-)	frameshift		42349	WP_003547949.1	aminopeptidase P family protein	100.0	40.1	83.1
MGA_1312	LOCUS_12850	sequence76:42329..42928(-)	frameshift		42349	WP_003547949.1	aminopeptidase P family protein	97.0	52.0	72.5
MGA_1318	LOCUS_12910	sequence76:47073..47999(+)	frameshift		46926	WP_100190734.1	IS3 family transposase	88.0	50.8	36.5
MGA_1325	LOCUS_12980	sequence76:54586..54888(-)	frameshift		54925	WP_003548017.1	GRP family sugar transporter	100.0	34.8	73.0
MGA_1326	LOCUS_12990	sequence76:54842..55447(-)	frameshift		54925	WP_003548017.1	GRP family sugar transporter	86.6	60.6	76.4
MGA_1342	LOCUS_13150	sequence76:71163..72194(-)	frameshift,internal_stop_codon	72211..72213(-),72202..72204(-)	72168	WP_100190734.1	IS3 family transposase	78.4	50.4	35.2
MGA_1350	LOCUS_13230	sequence77:6094..6996(-)	frameshift		7042	WP_003550081.1	zinc ribbon domain-containing protein	96.7	82.7	59.7
MGA_1364	LOCUS_13370	sequence77:23497..23940(-)	internal_stop_codon	23957..23959(-)		WP_003550051.1	DUF421 domain-containing protein	98.6	68.4	82.8
MGA_1367	LOCUS_13400	sequence77:25895..28714(-)	partial			WP_003550047.1	LPXTG cell wall anchor domain-containing protein	80.5	66.4	39.1
MGA_1370	LOCUS_13430	sequence77:33576..33770(-)	frameshift		33802	WP_011254533.1	PAS domain-containing protein	100.0	26.3	83.1
MGA_1371	LOCUS_13440	sequence77:33758..34321(-)	frameshift		33802	WP_011254533.1	PAS domain-containing protein	92.0	68.8	84.9
MGA_1392	LOCUS_13650	sequence77:51596..52150(+)	frameshift		52129	WP_003549990.1	matrixin family metalloprotease	100.0	79.3	56.0
MGA_1393	LOCUS_13660	sequence77:52120..52290(+)	frameshift		52129	WP_003549990.1	matrixin family metalloprotease	94.6	23.3	79.2
MGA_1400	LOCUS_13730	sequence77:57991..60201(-)	partial			WP_015613343.1	nuclease-related domain-containing protein	59.0	79.8	21.7
MGA_1402	LOCUS_13750	sequence77:60526..61374(-)	partial			WP_003548796.1	SLAP domain-containing protein	79.1	60.4	36.7
MGA_1405	LOCUS_13780	sequence77:63450..66458(-)	partial			WP_003546206.1	SEC10/PgrA surface exclusion domain-containing protein	16.8	47.3	41.4
MGA_1406	LOCUS_13790	sequence77:66699..67952(-)	partial			WP_011254543.1	DUF4767 domain-containing protein	35.5	42.9	40.6
MGA_1448	LOCUS_14210	sequence78:22644..22949(-)	frameshift		22951	WP_003546563.1	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	100.0	29.8	90.1
MGA_1449	LOCUS_14220	sequence78:22946..23662(-)	frameshift		22951	WP_003546563.1	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	99.6	69.9	91.6
MGA_1456	LOCUS_14290	sequence78:30369..30842(-)	frameshift		30371	WP_011254220.1	ComF family protein	100.0	68.0	56.7
MGA_1463	LOCUS_14360	sequence78:37794..38903(-)	partial			WP_003546527.1	helix-turn-helix domain-containing protein	73.7	73.5	68.8
MGA_1492	LOCUS_14650	sequence78:68077..68310(-)	frameshift		68312	WP_011254210.1	hypothetical protein	100.0	49.4	57.7
MGA_1493	LOCUS_14660	sequence78:68310..68555(-)	frameshift		68312	WP_011254210.1	hypothetical protein	96.3	48.7	64.1
MGA_1503	LOCUS_14760	sequence78:76523..77017(-)	frameshift		77022	WP_011254207.1	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	100.0	43.2	89.6
MGA_1504	LOCUS_14770	sequence78:76993..77664(-)	frameshift		77022	WP_011254207.1	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	95.5	56.1	93.4
MGA_1541	LOCUS_15130	sequence79:26948..27490(-)	frameshift		27528	WP_011254136.1	thioesterase	100.0	73.1	64.4
MGA_1542	LOCUS_15140	sequence79:27460..27684(-)	frameshift		27528	WP_011254136.1	thioesterase	68.9	20.8	68.6
MGA_1543	LOCUS_15150	sequence79:27687..28067(-)	frameshift		28105	WP_003549119.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	96.8	43.0	78.7
MGA_1544	LOCUS_15160	sequence79:28064..28540(-)	frameshift		28105	WP_003549119.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	91.8	51.1	91.7
MGA_1564	LOCUS_15360	sequence79:42374..42658(-)	frameshift		42663	WP_003549096.1	50S ribosomal protein L1	100.0	40.9	94.7
MGA_1565	LOCUS_15370	sequence79:42658..43065(-)	frameshift		42663	WP_003549096.1	50S ribosomal protein L1	99.3	58.3	87.3
MGA_1573	LOCUS_15450	sequence79:47881..48183(-)	frameshift		47919	WP_011254124.1	DNA-directed RNA polymerase subunit sigma	84.0	47.2	44.0
MGA_1630	LOCUS_16020	sequence79:91796..93178(-)	frameshift		93177	WP_003549016.1	ATP-dependent Clp protease ATP-binding subunit	99.6	55.5	79.7
MGA_1631	LOCUS_16030	sequence79:93175..94287(-)	frameshift		93177	WP_003549016.1	ATP-dependent Clp protease ATP-binding subunit	99.7	43.9	77.3
MGA_1636	LOCUS_16070	sequence80:4525..4989(+)	partial			WP_011254239.1	MFS transporter	87.7	29.2	75.6
MGA_1637	LOCUS_16080	sequence80:5016..5249(-)	partial			WP_011254604.1	RNA-guided endonuclease TnpB family protein	87.0	22.6	82.1
MGA_1639	LOCUS_16100	sequence80:5723..5986(-)	partial			WP_011254604.1	RNA-guided endonuclease TnpB family protein	90.8	26.6	91.1
MGA_1640	LOCUS_16110	sequence80:6167..7027(+)	partial			WP_011254239.1	MFS transporter	99.3	61.5	63.0
MGA_1647	LOCUS_16180	sequence80:13244..13744(+)	frameshift		13675	WP_003546735.1	peptide chain release factor 1	86.7	39.9	86.8
MGA_1648	LOCUS_16190	sequence80:13690..14331(+)	frameshift		13678	WP_003546735.1	peptide chain release factor 1	98.6	58.2	97.1
MGA_1663	LOCUS_16340	sequence80:25439..25594(+)	frameshift		25525	WP_003546752.1	FtsW/RodA/SpoVE family cell cycle protein	54.9	7.1	82.1
MGA_1691	LOCUS_16620	sequence80:52704..53795(+)	frameshift		53744	WP_011254257.1	cell division protein FtsA	96.7	78.0	78.1
MGA_1692	LOCUS_16630	sequence80:53750..54067(+)	frameshift		53744	WP_011254257.1	cell division protein FtsA	100.0	22.4	50.9
MGA_1699	LOCUS_16700	sequence80:60488..60847(+)	frameshift		60473	WP_011254260.1	isoleucine--tRNA ligase	100.0	12.8	79.0
MGA_1723	LOCUS_16940	sequence80:81813..82112(+)	frameshift		82094	WP_003546852.1	helix-hairpin-helix domain-containing protein	94.9	42.3	43.8
MGA_1724	LOCUS_16950	sequence80:82130..82498(+)	frameshift		82094	WP_003546852.1	helix-hairpin-helix domain-containing protein	98.4	51.5	69.2
MGA_1736	LOCUS_17070	sequence80:96510..97082(+)	frameshift		97064,97061	WP_003546358.1	ATP-binding cassette domain-containing protein	97.4	34.2	90.3
MGA_1737	LOCUS_17080	sequence80:97064..98131(+)	frameshift		97064,97061	WP_003546358.1	ATP-binding cassette domain-containing protein	100.0	65.6	88.5
MGA_1738	LOCUS_17090	sequence80:98172..98315(-)	partial			WP_003549428.1	SPJ_0845 family protein	59.6	57.1	85.7
MGA_1765	LOCUS_17360	sequence81:21086..22111(+)	partial			WP_003546245.1	SLAP domain-containing protein	89.7	63.5	36.3
MGA_1767	LOCUS_17380	sequence81:22928..23134(+)	frameshift		22928	WP_011675022.1	multidrug efflux SMR transporter	100.0	64.2	55.9
MGA_1769	LOCUS_17400	sequence81:24543..25133(+)	frameshift		25022	WP_003546204.1	peptidoglycan-binding protein	81.1	74.9	49.7
MGA_1771	LOCUS_17420	sequence81:25659..26171(+)	frameshift		25566	WP_003546206.1	SEC10/PgrA surface exclusion domain-containing protein	100.0	47.6	68.2
MGA_1777	LOCUS_17480	sequence81:30472..30792(-)	partial			WP_011389772.1	HigA family addiction module antitoxin	67.0	71.7	42.3
MGA_1785	LOCUS_17560	sequence81:37838..37981(+)	frameshift		37960,37963	WP_011254312.1	ATP-binding cassette domain-containing protein	85.1	4.7	87.5
MGA_1786	LOCUS_17570	sequence81:37965..39356(+)	frameshift		37960,37963,39334	WP_011254312.1	ATP-binding cassette domain-containing protein	99.1	54.4	83.2
MGA_1787	LOCUS_17580	sequence81:39392..40336(+)	frameshift		39332	WP_011254312.1	ATP-binding cassette domain-containing protein	98.4	36.6	79.6
MGA_1790	LOCUS_17610	sequence81:42060..43829(+)	partial			WP_003546245.1	SLAP domain-containing protein	69.1	83.2	55.0
MGA_1801	LOCUS_17720	sequence81:55942..57081(+)	frameshift		57078	WP_011254175.1	oligosaccharide flippase family protein	100.0	79.6	85.5
MGA_1802	LOCUS_17730	sequence81:57078..57371(+)	frameshift		57078	WP_011254175.1	oligosaccharide flippase family protein	100.0	20.4	73.2
MGA_1806	LOCUS_17770	sequence81:59533..60495(+)	frameshift		60480	WP_003546275.1	DNA helicase PcrA	98.4	42.2	90.5
MGA_1807	LOCUS_17780	sequence81:60717..61781(+)	frameshift		60480	WP_003546275.1	DNA helicase PcrA	100.0	47.1	75.8
MGA_1813	LOCUS_17840	sequence81:68197..68505(+)	frameshift		68496	WP_003546288.1	diacylglycerol kinase family lipid kinase	98.0	32.7	91.0
MGA_1814	LOCUS_17850	sequence81:68526..69116(+)	frameshift		68496	WP_003546288.1	diacylglycerol kinase family lipid kinase	99.0	63.4	91.8
MGA_1816	LOCUS_17870	sequence81:70004..70405(-)	frameshift		70452	WP_003546295.1	Na+/H+ antiporter NhaC	97.7	28.4	86.9
MGA_1817	LOCUS_17880	sequence81:70438..71379(-)	frameshift		70452	WP_003546295.1	Na+/H+ antiporter NhaC	98.4	67.2	77.6
MGA_1832	LOCUS_18030	sequence81:86173..87135(-)	frameshift		87176	WP_011254190.1	multidrug efflux MFS transporter	100.0	79.8	83.8
MGA_1834	LOCUS_18050	sequence81:88795..89187(+)	frameshift		89082	WP_011254002.1	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	73.8	29.4	69.8
MGA_1835	LOCUS_18060	sequence81:89088..89732(+)	frameshift		89082	WP_011254002.1	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	98.6	67.4	63.5
MGA_1838	LOCUS_18090	sequence81:90977..91333(-)	internal_stop_codon	91475..91477(-)		WP_011254326.1	histidine phosphatase family protein	100.0	59.0	51.7
MGA_1858	LOCUS_18290	sequence81:109680..110153(-)	partial			WP_003546400.1	DeoR/GlpR family DNA-binding transcription regulator	93.6	57.9	68.0