{ "type": "genome", "identifier": "GCF_000620045.1", "organism": "Halomonas halodenitrificans DSM 735", "title": "Halomonas halodenitrificans DSM 735", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000620045.1", "bioproject": "PRJNA224116", "biosample": "SAMN02952987", "wgs_master": "JHVH00000000.1", "refseq_category": "reference genome", "taxid": "1121941", "species_taxid": "28252", "organism_name": "Halomonas halodenitrificans DSM 735", "infraspecific_name": "strain=DSM 735", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/08", "asm_name": "ASM62004v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000620045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/620/045/GCF_000620045.1_ASM62004v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3464094", "genome_size_ungapped": "3462105", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "52", "contig_count": "55", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000620045.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3235", "protein_coding_gene_count": "3117", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-04-08", "dateModified": "2014-04-08", "datePublished": "2014-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomonas halodenitrificans DSM 735" ], "sample_taxid": [ "1121941" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.967 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3464094", "Number of Sequences": "52", "Longest Sequences (bp)": "385716", "N50 (bp)": "118993", "Gap Ratio (%)": "0.057418", "GCcontent (%)": "64.0", "Number of CDSs": "3138", "Average Protein Length": "329.0", "Coding Ratio (%)": "89.4", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas halodenitrificans", "strain": "strain=DSM 735", "accession": "GCA_000620045.1", "taxid": 28252, "species_taxid": 28252, "relation_to_type": 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"below_threshold" }, { "organism_name": "Halomonas saccharevitans", "strain": "strain=CGMCC 1.6493", "accession": "GCA_900116405.1", "taxid": 416872, "species_taxid": 416872, "relation_to_type": "type", "validated": true, "ani": 82.41, "matched_fragments": 706, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=9-2", "accession": "GCA_003202165.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 82.1937, "matched_fragments": 692, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 81.7792, "matched_fragments": 684, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 81.6035, "matched_fragments": 692, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas cerina", "strain": "strain=CECT 7282", "accession": "GCA_014192215.1", "taxid": 447424, "species_taxid": 447424, "relation_to_type": "type", "validated": true, "ani": 81.3223, "matched_fragments": 643, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 81.1454, "matched_fragments": 623, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lactosivorans", "strain": "strain=KCTC 52281", "accession": "GCA_003254665.1", "taxid": 2185141, "species_taxid": 2185141, "relation_to_type": "type", "validated": true, "ani": 81.1293, "matched_fragments": 643, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas salipaludis", "strain": "strain=WRN001", "accession": "GCA_002286975.1", "taxid": 2032625, "species_taxid": 2032625, "relation_to_type": "type", "validated": true, "ani": 80.9134, "matched_fragments": 609, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidivorans", "strain": "strain=MCCC 1A13718", "accession": "GCA_017868935.1", "taxid": 2733488, "species_taxid": 2733488, "relation_to_type": "type", "validated": true, "ani": 80.7834, "matched_fragments": 619, "total_fragments": 1128, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas kenyensis", "strain": "strain=DSM 17331", "accession": "GCA_022341445.1", "taxid": 321266, 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