{ "type": "genome", "identifier": "GCF_000620085.1", "organism": "Marinobacterium jannaschii DSM 6295", "title": "Marinobacterium jannaschii DSM 6295", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000620085.1", "bioproject": "PRJNA224116", "biosample": "SAMN02952989", "wgs_master": "JHVJ00000000.1", "refseq_category": "reference genome", "taxid": "1122200", "species_taxid": "64970", "organism_name": "Marinobacterium jannaschii DSM 6295", "infraspecific_name": "strain=DSM 6295", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/08", "asm_name": "ASM62008v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000620085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/620/085/GCF_000620085.1_ASM62008v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5177835", "genome_size_ungapped": "5174240", "gc_percent": "55.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000620085.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4718", "protein_coding_gene_count": "4610", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-04-08", "dateModified": "2014-04-08", "datePublished": "2014-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacterium jannaschii DSM 6295" ], "sample_taxid": [ "1122200" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.471 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5177835", "Number of Sequences": "39", "Longest Sequences (bp)": "433287", "N50 (bp)": "293170", "Gap Ratio (%)": "0.069431", "GCcontent (%)": "55.2", "Number of CDSs": "4690", "Average Protein Length": "320.8", "Coding Ratio (%)": "87.2", "Number of rRNAs": "3", "Number of tRNAs": "62", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacterium jannaschii", "strain": "strain=DSM 6295", "accession": "GCA_000620085.1", "taxid": 64970, "species_taxid": 64970, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1706, "total_fragments": 1706, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacterium arenosum", "strain": "strain=CAU 1594", "accession": "GCA_019795155.1", "taxid": 2862496, "species_taxid": 2862496, "relation_to_type": "type", "validated": true, "ani": 78.3775, "matched_fragments": 394, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neptuniibacter caesariensis", "strain": "strain=MED92", "accession": "GCA_000153345.1", "taxid": 207954, "species_taxid": 207954, "relation_to_type": "type", "validated": true, "ani": 78.1379, "matched_fragments": 144, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium mangrovicola", "strain": "strain=DSM 27697", "accession": "GCA_004339595.1", "taxid": 1476959, "species_taxid": 1476959, "relation_to_type": "type", "validated": true, "ani": 77.8801, "matched_fragments": 235, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium lutimaris", "strain": "strain=DSM 22012", "accession": "GCA_900108065.1", "taxid": 568106, "species_taxid": 568106, "relation_to_type": "type", "validated": true, "ani": 77.8442, "matched_fragments": 240, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neptunomonas concharum", "strain": "strain=JCM 17730", "accession": "GCA_006148955.1", "taxid": 1031538, "species_taxid": 1031538, "relation_to_type": "type", "validated": true, "ani": 77.536, "matched_fragments": 68, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphritea spongicola", "strain": "strain=JCM 16668", "accession": "GCA_017051665.1", "taxid": 707589, "species_taxid": 707589, "relation_to_type": "type", "validated": true, "ani": 77.4975, "matched_fragments": 228, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium alkalitolerans", "strain": "strain=AK62", "accession": "GCA_017776525.1", "taxid": 1542925, "species_taxid": 1542925, "relation_to_type": "type", "validated": true, "ani": 77.3946, "matched_fragments": 198, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium zhoushanense", "strain": "strain=CGMCC 1.15341", "accession": "GCA_014641945.1", "taxid": 1679163, "species_taxid": 1679163, "relation_to_type": "type", "validated": true, "ani": 77.3818, "matched_fragments": 234, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium ramblicola", "strain": "strain=D7", "accession": "GCA_019084545.1", "taxid": 2849041, "species_taxid": 2849041, "relation_to_type": "type", "validated": true, "ani": 77.3107, "matched_fragments": 246, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium profundum", "strain": "strain=PAMC 27536", "accession": "GCA_001528745.1", "taxid": 1714300, "species_taxid": 1714300, "relation_to_type": "type", "validated": true, "ani": 77.2865, "matched_fragments": 217, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium litorale", "strain": "strain=DSM 23545", "accession": "GCA_000428985.1", "taxid": 404770, "species_taxid": 404770, "relation_to_type": "type", "validated": true, "ani": 77.2409, "matched_fragments": 188, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium georgiense", "strain": "strain=DSM 11526", "accession": "GCA_900107855.1", "taxid": 48076, "species_taxid": 48076, "relation_to_type": "type", "validated": true, "ani": 77.1738, "matched_fragments": 167, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium rhizophilum", "strain": "strain=DSM 18822", "accession": "GCA_000378045.1", "taxid": 420402, "species_taxid": 420402, "relation_to_type": "type", "validated": true, "ani": 77.0542, "matched_fragments": 232, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphritea pacifica", "strain": "strain=ZJ14W", "accession": "GCA_016924145.1", "taxid": 2811233, "species_taxid": 2811233, "relation_to_type": "type", "validated": true, "ani": 77.0521, "matched_fragments": 180, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium nitratireducens", "strain": "strain=CGMCC 1.7286", "accession": "GCA_014645375.1", "taxid": 518897, "species_taxid": 518897, "relation_to_type": "type", "validated": true, "ani": 76.9832, "matched_fragments": 237, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphritea atlantica", "strain": "strain=DSM 18887", "accession": "GCA_900111095.1", "taxid": 355243, "species_taxid": 355243, "relation_to_type": "type", "validated": true, "ani": 76.9399, "matched_fragments": 188, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motiliproteus coralliicola", "strain": "strain=C34", "accession": "GCA_003345655.1", "taxid": 2283196, "species_taxid": 2283196, "relation_to_type": "type", "validated": true, "ani": 76.8612, "matched_fragments": 206, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motiliproteus sediminis", "strain": "strain=HS6", "accession": "GCA_017912535.1", "taxid": 1468178, "species_taxid": 1468178, "relation_to_type": "type", "validated": true, "ani": 76.5214, "matched_fragments": 121, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrimonas marina", "strain": "strain=DSM 16917", "accession": "GCA_900129905.1", "taxid": 299255, 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"total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_900114065.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 75.7904, "matched_fragments": 79, "total_fragments": 1706, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000620085.1", "gtdb_species": "s__Marinobacterium_B jannaschii", "ani": 100.0, "matched_fragments": 1706, "total_fragments": 1706, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Marinobacterium_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": 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