{ "type": "genome", "identifier": "GCF_000620965.1", "organism": "Campylobacter upsaliensis DSM 5365", "title": "Campylobacter upsaliensis DSM 5365", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000620965.1", "bioproject": "PRJNA224116", "biosample": "SAMN02743969", "wgs_master": "JHZN00000000.1", "refseq_category": "na", "taxid": "1121269", "species_taxid": "28080", "organism_name": "Campylobacter upsaliensis DSM 5365", "infraspecific_name": "strain=DSM 5365", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/08", "asm_name": "ASM62096v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000620965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/620/965/GCF_000620965.1_ASM62096v1", 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"sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.445 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1619052", "Number of Sequences": "43", "Longest Sequences (bp)": "217341", "N50 (bp)": "118240", "Gap Ratio (%)": "0.003088", "GCcontent (%)": "35.0", "Number of CDSs": "1609", "Average Protein Length": "310.3", "Coding Ratio (%)": "92.5", "Number of rRNAs": "1", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Campylobacter upsaliensis", "strain": "strain=DSM 5365", "accession": "GCA_000620965.1", "taxid": 28080, "species_taxid": 28080, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 516, 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"s__Campylobacter_D aviculae", "ani": 77.783, "matched_fragments": 182, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000470055.1", "gtdb_species": "s__Campylobacter_D coli_A", "ani": 77.7649, "matched_fragments": 224, "total_fragments": 517, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.85", "min_intra_species_ani": "97.41", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 86, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.523, 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