{
    "type": "genome",
    "identifier": "GCF_000620985.1",
    "organism": "Brochothrix thermosphacta DSM 20171 = FSL F6-1036",
    "title": "Brochothrix thermosphacta DSM 20171 = FSL F6-1036",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000620985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02743972",
        "wgs_master": "JHZM00000000.1",
        "refseq_category": "na",
        "taxid": "1121126",
        "species_taxid": "2756",
        "organism_name": "Brochothrix thermosphacta DSM 20171 = FSL F6-1036",
        "infraspecific_name": "strain=DSM 20171",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/04/08",
        "asm_name": "ASM62098v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000620985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/620/985/GCF_000620985.1_ASM62098v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2503118",
        "genome_size_ungapped": "2501117",
        "gc_percent": "36.500000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "33",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000620985.1-RS_2024_04_26",
        "annotation_date": "2024-04-26",
        "total_gene_count": "2473",
        "protein_coding_gene_count": "2378",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-04-08",
    "dateModified": "2014-04-08",
    "datePublished": "2014-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Brochothrix thermosphacta DSM 20171 = FSL F6-1036"
        ],
        "sample_taxid": [
            "1121126"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.707 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2503118",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "494728",
        "N50 (bp)": "142284",
        "Gap Ratio (%)": "0.079940",
        "GCcontent (%)": "36.3",
        "Number of CDSs": "2432",
        "Average Protein Length": "291.3",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Brochothrix thermosphacta",
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                "species_taxid": 2756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 817,
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                "status": "conclusive"
            },
            {
                "organism_name": "Brochothrix thermosphacta",
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                "species_taxid": 2756,
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                "ani": 99.9832,
                "matched_fragments": 800,
                "total_fragments": 820,
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                "status": "conclusive"
            },
            {
                "organism_name": "Brochothrix campestris",
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                "species_taxid": 2757,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Listeria innocua",
                "strain": "strain=H0996",
                "accession": "GCA_017363655.2",
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                "species_taxid": 1642,
                "relation_to_type": "claderef",
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                "ani": 76.7966,
                "matched_fragments": 50,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Listeria innocua",
                "strain": "strain=F4078",
                "accession": "GCA_024721565.1",
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                "species_taxid": 1642,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.752,
                "matched_fragments": 51,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Listeria monocytogenes",
                "strain": "strain=J0099",
                "accession": "GCA_013625995.1",
                "taxid": 1639,
                "species_taxid": 1639,
                "relation_to_type": "claderef",
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                "status": "below_threshold"
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        ],
        "cc_result": {
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        "gtdb_result": [
            {
                "accession": "GCF_000620985.1",
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                "matched_fragments": 817,
                "total_fragments": 820,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix",
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                "num_clustered_genomes": 27,
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            {
                "accession": "GCF_000525915.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_900187225.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 1977,
                "status": "-"
            },
            {
                "accession": "GCF_014229645.1",
                "gtdb_species": "s__Listeria sp014229645",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": null,
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        "growth_tmp": 26.0,
        "optimum_tmp": null,
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        "gc_content": 36.4,
        "coding_genes": 2392.0,
        "rRNA16S_genes": 9.0,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 1.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
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        "thermosphacta",
        "DSM",
        "20171",
        "=",
        "FSL",
        "F6-1036"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}