{ "tc_result": [ { "organism_name": "Campylobacter cuniculorum", "strain": "strain=DSM 23162", "accession": "GCA_000621005.1", "taxid": 374106, "species_taxid": 374106, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 597, "total_fragments": 600, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter cuniculorum", "strain": "strain=LMG 24588", "accession": "GCA_002104335.1", "taxid": 374106, "species_taxid": 374106, "relation_to_type": "type", "validated": true, "ani": 99.987, "matched_fragments": 599, "total_fragments": 600, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter jejuni", "strain": "strain=NCTC11351", "accession": "GCA_001457695.1", "taxid": 197, "species_taxid": 197, "relation_to_type": "type", "validated": true, "ani": 79.4256, "matched_fragments": 278, "total_fragments": 600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter jejuni subsp. jejuni", "strain": "strain=ATCC 33560", "accession": "GCA_000254515.2", "taxid": 32022, "species_taxid": 197, "relation_to_type": "type", "validated": true, "ani": 79.4139, "matched_fragments": 249, "total_fragments": 600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter jejuni subsp. jejuni", "strain": "strain=CCUG 11284", "accession": "GCA_008802045.1", "taxid": 32022, "species_taxid": 197, "relation_to_type": "type", "validated": true, "ani": 79.2332, "matched_fragments": 283, "total_fragments": 600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter coli", "strain": "strain=LMG 9860", "accession": "GCA_000254135.2", "taxid": 195, "species_taxid": 195, "relation_to_type": "type", "validated": true, "ani": 78.6393, "matched_fragments": 259, "total_fragments": 600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter coli", "strain": "strain=LMG6440", "accession": "GCA_003590975.1", "taxid": 195, "species_taxid": 195, "relation_to_type": "type", "validated": true, "ani": 78.5913, "matched_fragments": 275, "total_fragments": 600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter taeniopygiae", "strain": "strain=MIT10-5678", "accession": "GCA_005406225.1", "taxid": 2510188, "species_taxid": 2510188, "relation_to_type": "type", "validated": true, "ani": 78.4232, "matched_fragments": 250, "total_fragments": 600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter hepaticus", "strain": "strain=HV10", "accession": "GCA_001687475.2", "taxid": 1813019, "species_taxid": 1813019, "relation_to_type": "type", "validated": true, "ani": 78.322, "matched_fragments": 259, "total_fragments": 600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter aviculae", "strain": "strain=MIT17-670", "accession": "GCA_005406215.1", "taxid": 2510190, "species_taxid": 2510190, "relation_to_type": "type", "validated": true, "ani": 78.1567, "matched_fragments": 239, "total_fragments": 600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter novaezeelandiae", "strain": "strain=B423b", "accession": "GCA_004323845.1", "taxid": 2267891, "species_taxid": 2267891, "relation_to_type": "type", "validated": true, "ani": 78.0041, "matched_fragments": 229, "total_fragments": 600, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002104335.1", "gtdb_species": "s__Campylobacter_D cuniculorum", "ani": 99.987, "matched_fragments": 599, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_001457695.1", "gtdb_species": "s__Campylobacter_D jejuni", "ani": 79.3532, "matched_fragments": 279, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.50", "min_intra_species_ani": "95.69", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.84", "num_clustered_genomes": 1918, "status": "-" }, { "accession": "GCF_002179165.1", "gtdb_species": "s__Campylobacter_D jejuni_B", "ani": 78.8985, "matched_fragments": 277, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000163995.1", "gtdb_species": "s__Campylobacter_D jejuni_A", "ani": 78.8636, "matched_fragments": 277, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001492295.1", "gtdb_species": "s__Campylobacter_D coli_B", "ani": 78.7555, "matched_fragments": 286, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "98.33", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.85", "num_clustered_genomes": 59, "status": "-" }, { "accession": "GCA_014305285.1", "gtdb_species": "s__Campylobacter_D jejuni_D", "ani": 78.7456, "matched_fragments": 265, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004378855.1", "gtdb_species": "s__Campylobacter_D sp004378855", "ani": 78.4801, "matched_fragments": 258, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005406225.1", "gtdb_species": "s__Campylobacter_D taeniopygiae", "ani": 78.43, "matched_fragments": 249, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001687475.2", "gtdb_species": "s__Campylobacter_D hepaticus", "ani": 78.3454, "matched_fragments": 258, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.56", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.97", "num_clustered_genomes": 33, "status": "-" }, { "accession": "GCF_005406215.1", "gtdb_species": "s__Campylobacter_D aviculae", "ani": 78.1821, "matched_fragments": 236, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005406205.1", "gtdb_species": "s__Campylobacter_D estrildidarum", "ani": 78.1529, "matched_fragments": 241, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016598935.1", "gtdb_species": "s__Campylobacter_D sp016598935", "ani": 77.992, "matched_fragments": 225, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004323845.1", "gtdb_species": "s__Campylobacter_D novaezeelandiae", "ani": 77.9437, "matched_fragments": 233, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "98.04", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_006864455.1", "gtdb_species": "s__Campylobacter_D sp006864455", "ani": 77.2454, "matched_fragments": 156, "total_fragments": 600, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }