{ "type": "genome", "identifier": "GCF_000621125.1", "organism": "Maribacter antarcticus DSM 21422", "title": "Maribacter antarcticus DSM 21422", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000621125.1", "bioproject": "PRJNA224116", "biosample": "SAMN02743978", "wgs_master": "JHZC00000000.1", "refseq_category": "reference genome", "taxid": "1122191", "species_taxid": "505250", "organism_name": "Maribacter antarcticus DSM 21422", "infraspecific_name": "strain=DSM 21422", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/08", "asm_name": "ASM62112v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000621125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/621/125/GCF_000621125.1_ASM62112v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4853010", "genome_size_ungapped": "4850061", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000621125.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4254", "protein_coding_gene_count": "4119", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-04-08", "dateModified": "2014-04-08", "datePublished": "2014-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Maribacter antarcticus DSM 21422" ], "sample_taxid": [ "1122191" ], "sample_host_organism": [ "Pyramimonas gelidicola" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Southern Ocean" ], "sample_host_location_id": [], "data_size": "1.374 MB", "sample_ph_range": { "min": 79.0, "max": 79.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4853010", "Number of Sequences": "32", "Longest Sequences (bp)": "1099025", "N50 (bp)": "353268", "Gap Ratio (%)": "0.060766", "GCcontent (%)": "37.4", "Number of CDSs": "4103", "Average Protein Length": "329.1", "Coding Ratio (%)": "83.5", "Number of rRNAs": "4", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Maribacter antarcticus", "strain": "strain=DSM 21422", "accession": "GCA_000621125.1", "taxid": 505250, 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aggregata", "strain": "strain=KCCM 42265", "accession": "GCA_013402795.1", "taxid": 343403, "species_taxid": 343403, "relation_to_type": "type", "validated": true, "ani": 76.9565, "matched_fragments": 171, "total_fragments": 1602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga omnivescoria", "strain": "strain=W5C", "accession": "GCA_001999725.1", "taxid": 1888890, "species_taxid": 1888890, "relation_to_type": "type", "validated": true, "ani": 76.6531, "matched_fragments": 126, "total_fragments": 1602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordia antarctica", "strain": "strain=IMCC3317", "accession": "GCA_009901525.1", "taxid": 1218801, "species_taxid": 1218801, "relation_to_type": "type", "validated": true, "ani": 76.5471, "matched_fragments": 65, "total_fragments": 1602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda lutimaris", "strain": "strain=KCTC 22173", "accession": "GCA_003581615.1", "taxid": 475082, "species_taxid": 475082, "relation_to_type": "type", "validated": true, "ani": 76.4906, "matched_fragments": 100, "total_fragments": 1602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga tyrosinoxydans", "strain": "strain=DSM 21164", "accession": "GCA_900176415.1", "taxid": 504486, "species_taxid": 504486, "relation_to_type": "type", "validated": true, "ani": 76.4422, "matched_fragments": 157, "total_fragments": 1602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 76.1734, "matched_fragments": 64, "total_fragments": 1602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Joostella atrarenae", "strain": "strain=M1-2", "accession": "GCA_021764745.1", "taxid": 679257, "species_taxid": 679257, 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