{ "type": "genome", "identifier": "GCF_000621165.1", "organism": "Enterovibrio calviensis DSM 14347", "title": "Enterovibrio calviensis DSM 14347", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000621165.1", "bioproject": "PRJNA224116", "biosample": "SAMN02743982", "wgs_master": "JHZA00000000.1", "refseq_category": "reference genome", "taxid": "1121867", "species_taxid": "91359", "organism_name": "Enterovibrio calviensis DSM 14347", "infraspecific_name": "strain=DSM 14347", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/08", "asm_name": "ASM62116v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000621165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/621/165/GCF_000621165.1_ASM62116v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5503346", "genome_size_ungapped": "5497474", "gc_percent": "47.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000621165.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4887", "protein_coding_gene_count": "4744", "non_coding_gene_count": "92", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-04-08", "dateModified": "2014-04-08", "datePublished": "2014-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterovibrio calviensis DSM 14347" ], "sample_taxid": [ "1121867" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mediterranean Sea: coast of Corsica, France" ], "sample_host_location_id": [], "data_size": "1.571 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5503346", "Number of Sequences": "28", "Longest Sequences (bp)": "1112605", "N50 (bp)": "461029", "Gap Ratio (%)": "0.106699", "GCcontent (%)": "47.5", "Number of CDSs": "4784", "Average Protein Length": "327.1", "Coding Ratio (%)": "85.3", "Number of rRNAs": "4", "Number of tRNAs": "76", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterovibrio calviensis", "strain": "strain=DSM 14347", "accession": "GCA_000621165.1", "taxid": 91359, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia marina", "strain": "strain=CECT 8713", "accession": "GCA_900060185.1", "taxid": 646534, "species_taxid": 646534, "relation_to_type": "type", "validated": true, "ani": 79.9823, "matched_fragments": 611, "total_fragments": 1818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia celer", "strain": "strain=CECT 9029", "accession": "GCA_900055185.1", "taxid": 1796497, "species_taxid": 1796497, "relation_to_type": "type", "validated": true, "ani": 79.9446, "matched_fragments": 675, "total_fragments": 1818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium swingsii", "strain": "strain=CECT 7576", "accession": "GCA_024346715.1", "taxid": 680026, "species_taxid": 680026, "relation_to_type": "type", "validated": true, "ani": 78.3945, "matched_fragments": 213, "total_fragments": 1818, "ani_threshold": 95, "status": "below_threshold" }, { 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