{ "type": "genome", "identifier": "GCF_000621245.1", "organism": "Pseudomonas monteilii NBRC 103158 = DSM 14164", "title": "Pseudomonas monteilii NBRC 103158 = DSM 14164", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000621245.1", "bioproject": "PRJNA224116", "biosample": "SAMN02743984", "wgs_master": "JHYV00000000.1", "refseq_category": "na", "taxid": "1215110", "species_taxid": "76759", "organism_name": "Pseudomonas monteilii NBRC 103158 = DSM 14164", "infraspecific_name": "strain=DSM 14164", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/08", "asm_name": "ASM62124v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000621245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/621/245/GCF_000621245.1_ASM62124v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6308713", "genome_size_ungapped": "6308428", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "85", "contig_count": "86", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000621245.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "6054", "protein_coding_gene_count": "5798", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-04-08", "dateModified": "2014-04-08", "datePublished": "2014-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas monteilii NBRC 103158 = DSM 14164" ], "sample_taxid": [ "1215110" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.768 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6308713", "Number of Sequences": "85", "Longest Sequences (bp)": "542100", "N50 (bp)": "204302", "Gap Ratio (%)": "0.004518", "GCcontent (%)": "61.5", "Number of CDSs": "5910", "Average Protein Length": "313.1", "Coding Ratio (%)": "88.0", "Number of rRNAs": "4", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas monteilii", "strain": "strain=DSM 14164", "accession": "GCA_000621245.1", "taxid": 76759, "species_taxid": 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90.6603, "matched_fragments": 1550, "total_fragments": 2064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=NCTC10936", "accession": "GCA_900455645.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 90.6521, "matched_fragments": 1555, "total_fragments": 2064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas inefficax", "strain": "strain=JV551A3", "accession": "GCA_900277125.1", "taxid": 2078786, "species_taxid": 2078786, "relation_to_type": "type", "validated": true, "ani": 90.0272, "matched_fragments": 1500, "total_fragments": 2064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas anuradhapurensis", "strain": "strain=RD8MR3", "accession": "GCA_014269225.2", "taxid": 485870, "species_taxid": 485870, "relation_to_type": "type", "validated": true, "ani": 89.0728, "matched_fragments": 1429, "total_fragments": 2064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzicola", "strain": "strain=RD9SR1", "accession": "GCA_014269185.2", "taxid": 485876, "species_taxid": 485876, "relation_to_type": "type", "validated": true, "ani": 88.9534, "matched_fragments": 1413, "total_fragments": 2064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 87.7934, "matched_fragments": 1385, "total_fragments": 2064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 87.7615, "matched_fragments": 1307, "total_fragments": 2064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_022548835.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", "validated": true, "ani": 87.6377, "matched_fragments": 1322, "total_fragments": 2064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kermanshahensis", "strain": "strain=SWRI100", "accession": "GCA_014269205.2", "taxid": 2745482, "species_taxid": 2745482, "relation_to_type": "type", "validated": true, "ani": 87.4867, "matched_fragments": 1431, "total_fragments": 2064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_021602465.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 87.3596, "matched_fragments": 1396, "total_fragments": 2064, "ani_threshold": 95, "status": "below_threshold" }, { 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