{
    "type": "genome",
    "identifier": "GCF_000621645.1",
    "organism": "Vibrio cholerae ATCC 14035",
    "title": "Vibrio cholerae ATCC 14035",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000621645.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02744003",
        "wgs_master": "JHXR00000000.1",
        "refseq_category": "na",
        "taxid": "1408478",
        "species_taxid": "666",
        "organism_name": "Vibrio cholerae ATCC 14035",
        "infraspecific_name": "strain=ATCC 14035",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/04/08",
        "asm_name": "ASM62164v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000621645.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/621/645/GCF_000621645.1_ASM62164v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4024517",
        "genome_size_ungapped": "4021845",
        "gc_percent": "47.500000",
        "replicon_count": "0",
        "scaffold_count": "62",
        "contig_count": "68",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000621645.1-RS_2024_05_15",
        "annotation_date": "2024-05-15",
        "total_gene_count": "3737",
        "protein_coding_gene_count": "3568",
        "non_coding_gene_count": "90",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-04-08",
    "dateModified": "2014-04-08",
    "datePublished": "2014-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Vibrio cholerae ATCC 14035"
        ],
        "sample_taxid": [
            "1408478"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.149 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4024517",
        "Number of Sequences": "62",
        "Longest Sequences (bp)": "394436",
        "N50 (bp)": "208622",
        "Gap Ratio (%)": "0.066393",
        "GCcontent (%)": "47.5",
        "Number of CDSs": "3592",
        "Average Protein Length": "324.6",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "7",
        "Number of tRNAs": "70",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Vibrio cholerae",
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                "species_taxid": 666,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1308,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Vibrio paracholerae",
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                "species_taxid": 650003,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Vibrio tarriae",
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                "species_taxid": 2014742,
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            },
            {
                "organism_name": "Vibrio metoecus",
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                "species_taxid": 1481663,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio mimicus",
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                "accession": "GCA_000338875.1",
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                "species_taxid": 674,
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                "ani": 86.483,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio mimicus",
                "strain": "strain=NCTC11435",
                "accession": "GCA_900460385.1",
                "taxid": 674,
                "species_taxid": 674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.4532,
                "matched_fragments": 1038,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio panuliri",
                "strain": "strain=JCM 19500",
                "accession": "GCA_009938205.1",
                "taxid": 1381081,
                "species_taxid": 1381081,
                "relation_to_type": "type",
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                "ani": 78.5053,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio fortis",
                "strain": "strain=LMG 21557",
                "accession": "GCA_024347475.1",
                "taxid": 212667,
                "species_taxid": 212667,
                "relation_to_type": "type",
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                "ani": 78.4823,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio panuliri",
                "strain": "strain=LBS 2",
                "accession": "GCA_008830195.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4664,
                "matched_fragments": 310,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vibrio natriegens",
                "strain": "strain=14048",
                "accession": "GCA_024508015.1",
                "taxid": 691,
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                "relation_to_type": "type",
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                "ani": 78.3069,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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                "accession": "GCF_001471585.2",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "95.09",
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                "num_clustered_genomes": 1544,
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            },
            {
                "accession": "GCF_009665255.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
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                "num_clustered_genomes": 2,
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio",
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        ]
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    "_bac2feature": {
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "cholerae",
        "ATCC",
        "14035"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}