{ "type": "genome", "identifier": "GCF_000621665.1", "organism": "Allorhizobium undicola ORS 992 = ATCC 700741", "title": "Allorhizobium undicola ORS 992 = ATCC 700741", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000621665.1", "bioproject": "PRJNA224116", "biosample": "SAMN02744004", "wgs_master": "JHXQ00000000.1", "refseq_category": "reference genome", "taxid": "1370122", "species_taxid": "78527", "organism_name": "Allorhizobium undicola ORS 992 = ATCC 700741", "infraspecific_name": "strain=ATCC 700741", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/08", "asm_name": "ASM62166v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000621665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/621/665/GCF_000621665.1_ASM62166v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4133860", "genome_size_ungapped": "4133680", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "51", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000621665.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3781", "protein_coding_gene_count": "3668", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-04-08", "dateModified": "2014-04-08", "datePublished": "2014-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Allorhizobium undicola ORS 992 = ATCC 700741" ], "sample_taxid": [ "1370122" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.158 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4133860", "Number of Sequences": "49", "Longest Sequences (bp)": "418850", "N50 (bp)": "170604", "Gap Ratio (%)": "0.004354", "GCcontent (%)": "59.3", "Number of CDSs": "3716", "Average Protein Length": "316.9", "Coding Ratio (%)": "85.5", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhizobium taibaishanense", "strain": "strain=DSM 100021", "accession": "GCA_014196735.1", "taxid": 887144, "species_taxid": 887144, 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"accession": "GCA_014196605.1", "taxid": 451876, "species_taxid": 451876, "relation_to_type": "type", "validated": true, "ani": 78.3155, "matched_fragments": 383, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium phaseoli", "strain": "strain=ATCC 14482", "accession": "GCA_003985125.1", "taxid": 396, "species_taxid": 396, "relation_to_type": "type", "validated": true, "ani": 78.225, "matched_fragments": 470, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium sophoriradicis", "strain": "strain=CCBAU 03470", "accession": "GCA_003939025.1", "taxid": 1535245, "species_taxid": 1535245, "relation_to_type": "type", "validated": true, "ani": 78.2202, "matched_fragments": 475, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium binae", "strain": "strain=BLR195", "accession": "GCA_017357225.1", "taxid": 1138190, "species_taxid": 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