{ "type": "genome", "identifier": "GCF_000621965.1", "organism": "Methanobrevibacter wolinii SH", "title": "Methanobrevibacter wolinii SH", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000621965.1", "bioproject": "PRJNA224116", "biosample": "SAMN02744021", "wgs_master": "JHWX00000000.1", "refseq_category": "reference genome", "taxid": "1410664", "species_taxid": "190977", "organism_name": "Methanobrevibacter wolinii SH", "infraspecific_name": "strain=SH", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/08", "asm_name": "ASM62196v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000621965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/621/965/GCF_000621965.1_ASM62196v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "2041814", "genome_size_ungapped": "2038673", "gc_percent": "24.000000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000621965.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "1762", "protein_coding_gene_count": "1687", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-04-08", "dateModified": "2014-04-08", "datePublished": "2014-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanobrevibacter wolinii SH" ], "sample_taxid": [ "1410664" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.537 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2041814", "Number of Sequences": "26", "Longest Sequences (bp)": "328521", "N50 (bp)": "137557", "Gap Ratio (%)": "0.153834", "GCcontent (%)": "24.2", "Number of CDSs": "1705", "Average Protein Length": "301.8", "Coding Ratio (%)": "75.6", "Number of rRNAs": "3", "Number of tRNAs": "34", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanobrevibacter wolinii", "strain": "strain=SH", "accession": "GCA_000621965.1", "taxid": 190977, "species_taxid": 190977, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 667, "total_fragments": 667, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methanobrevibacter boviskoreani", "strain": "strain=JH1", "accession": "GCA_000320505.2", "taxid": 1348249, "species_taxid": 1348249, "relation_to_type": "type", "validated": true, "ani": 80.0714, "matched_fragments": 341, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter smithii", "strain": "strain=ATCC 35061; 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