{ "type": "genome", "identifier": "GCF_000622225.1", "organism": "Roseomonas mucosa ATCC BAA-692", "title": "Roseomonas mucosa ATCC BAA-692", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000622225.1", "bioproject": "PRJNA224116", "biosample": "SAMN02744033", "wgs_master": "JHWD00000000.1", "refseq_category": "na", "taxid": "1448136", "species_taxid": "207340", "organism_name": "Roseomonas mucosa ATCC BAA-692", "infraspecific_name": "strain=ATCC BAA-692", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/08", "asm_name": "ASM62222v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000622225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/622/225/GCF_000622225.1_ASM62222v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4864580", "genome_size_ungapped": "4858350", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "77", "contig_count": "81", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000622225.1-RS_2024_12_15", "annotation_date": "2024-12-15", "total_gene_count": "4533", "protein_coding_gene_count": "4396", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-04-08", "dateModified": "2014-04-08", "datePublished": "2014-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseomonas mucosa ATCC BAA-692" ], "sample_taxid": [ "1448136" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.310 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4864580", "Number of Sequences": "77", "Longest Sequences (bp)": "528704", "N50 (bp)": "238615", "Gap Ratio (%)": "0.128069", "GCcontent (%)": "70.4", "Number of CDSs": "4489", "Average Protein Length": "319.3", "Coding Ratio (%)": "88.4", "Number of rRNAs": "2", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseomonas mucosa", "strain": "strain=ATCC BAA-692", "accession": "GCA_000622225.1", "taxid": 207340, "species_taxid": 207340, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1571, "total_fragments": 1577, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseomonas mucosa", "strain": "strain=NCTC13291", "accession": "GCA_900455935.1", "taxid": 207340, "species_taxid": 207340, "relation_to_type": "type", "validated": true, "ani": 99.9746, "matched_fragments": 1571, "total_fragments": 1577, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseomonas gilardii subsp. rosea", "strain": "strain=NCTC13290", "accession": "GCA_900455865.1", "taxid": 243956, "species_taxid": 257708, "relation_to_type": "type", "validated": true, "ani": 93.2003, "matched_fragments": 1233, "total_fragments": 1577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas gilardii subsp. rosea", "strain": "strain=ATCC BAA-691", "accession": "GCA_000518625.1", "taxid": 243956, "species_taxid": 257708, "relation_to_type": "type", "validated": true, "ani": 93.0375, "matched_fragments": 1295, "total_fragments": 1577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas cervicalis", "strain": "strain=ATCC 49957", "accession": "GCA_000164635.1", "taxid": 204525, "species_taxid": 204525, "relation_to_type": "type", "validated": true, "ani": 80.5546, "matched_fragments": 686, "total_fragments": 1577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas pecuniae", "strain": "strain=DSM 25622", "accession": "GCA_014199205.1", "taxid": 693023, "species_taxid": 693023, "relation_to_type": "type", "validated": true, "ani": 79.8306, "matched_fragments": 698, "total_fragments": 1577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas wenyumeiae", "strain": "strain=Z23", "accession": "GCA_003696345.1", "taxid": 2478470, "species_taxid": 2478470, "relation_to_type": "type", "validated": true, "ani": 79.7978, "matched_fragments": 769, "total_fragments": 1577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas marmotae", "strain": "strain=1318", "accession": "GCA_017654485.1", "taxid": 2768161, "species_taxid": 2768161, "relation_to_type": "type", "validated": true, "ani": 79.6059, "matched_fragments": 684, "total_fragments": 1577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas haemaphysalidis", "strain": "strain=546", "accession": "GCA_017355405.1", "taxid": 2768162, "species_taxid": 2768162, "relation_to_type": "type", "validated": true, "ani": 79.368, "matched_fragments": 704, "total_fragments": 1577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, "species_taxid": 1452450, "relation_to_type": "type", "validated": true, "ani": 78.9472, "matched_fragments": 592, "total_fragments": 1577, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rubea", "strain": "strain=MO17", "accession": "GCA_016106015.1", 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