{ "type": "genome", "identifier": "GCF_000622365.1", "organism": "Sulfitobacter noctilucae", "title": "Sulfitobacter noctilucae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yonsei University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000622365.1", "bioproject": "PRJNA224116", "biosample": "SAMN02721580", "wgs_master": "JASC00000000.1", "refseq_category": "reference genome", "taxid": "1342302", "species_taxid": "1342302", "organism_name": "Sulfitobacter noctilucae", "infraspecific_name": "strain=NB-68", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/08", "asm_name": "NB68_draft", "asm_submitter": "Yonsei University", "gbrs_paired_asm": "GCA_000622365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/622/365/GCF_000622365.1_NB68_draft", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3914541", "genome_size_ungapped": "3914541", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000622365.1-RS_2024_04_02", "annotation_date": "2024-04-02", "total_gene_count": "3762", "protein_coding_gene_count": "3677", "non_coding_gene_count": "53", "pubmed_id": "25122614" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-04-08", "dateModified": "2014-04-08", "datePublished": "2014-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfitobacter noctilucae" ], "sample_taxid": [ "1342302" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Geoje Island" ], "sample_host_location_id": [], "data_size": "1.108 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3914541", "Number of Sequences": "14", "Longest Sequences (bp)": "1855050", "N50 (bp)": "704360", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.3", "Number of CDSs": "3742", "Average Protein Length": "315.6", "Coding Ratio (%)": "90.5", "Number of rRNAs": "6", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfitobacter noctilucae", "strain": "strain=NB-68", "accession": "GCA_000622365.1", "taxid": 1342302, "species_taxid": 1342302, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1298, "total_fragments": 1299, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sulfitobacter noctilucicola", "strain": "strain=NB-77", "accession": "GCA_000622385.1", "taxid": 1342301, "species_taxid": 1342301, "relation_to_type": "type", "validated": true, "ani": 79.4964, "matched_fragments": 593, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucicola", "strain": "strain=DSM 101015", "accession": "GCA_014197555.1", "taxid": 1342301, "species_taxid": 1342301, "relation_to_type": "type", "validated": true, "ani": 79.442, "matched_fragments": 590, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=MM-124", "accession": "GCA_000622325.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 79.2828, "matched_fragments": 654, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=DSM 101063", "accession": "GCA_013407805.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 79.2743, "matched_fragments": 637, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter mediterraneus", "strain": "strain=DSM 12244", "accession": "GCA_003054325.1", "taxid": 83219, "species_taxid": 83219, "relation_to_type": "type", "validated": true, "ani": 78.4606, "matched_fragments": 535, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter delicatus", "strain": "strain=DSM 16477", "accession": "GCA_900102535.1", "taxid": 218672, "species_taxid": 218672, "relation_to_type": "type", "validated": true, "ani": 78.0089, "matched_fragments": 416, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter dubius", "strain": "strain=DSM 16472", "accession": "GCA_900113435.1", "taxid": 218673, "species_taxid": 218673, "relation_to_type": "type", "validated": true, "ani": 77.996, "matched_fragments": 421, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.8913, "matched_fragments": 422, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.8568, "matched_fragments": 423, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter sabulilitoris", "strain": "strain=HSMS-29", "accession": "GCA_005887615.1", "taxid": 2562655, "species_taxid": 2562655, "relation_to_type": "type", "validated": true, "ani": 77.6546, "matched_fragments": 448, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola aestuarii", "strain": "strain=E2-1", "accession": "GCA_010614805.1", "taxid": 2697319, "species_taxid": 2697319, "relation_to_type": "type", "validated": true, "ani": 76.9289, "matched_fragments": 205, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 76.7915, "matched_fragments": 236, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 76.6793, "matched_fragments": 182, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 76.2719, "matched_fragments": 132, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudogemmobacter hezensis", "strain": "strain=D13-10-4-6", "accession": "GCA_013155295.1", "taxid": 2737662, "species_taxid": 2737662, "relation_to_type": "type", "validated": true, "ani": 76.1054, "matched_fragments": 140, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000622365.1", "gtdb_species": "s__Sulfitobacter noctilucae", "ani": 100.0, "matched_fragments": 1297, "total_fragments": 1299, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000622385.1", "gtdb_species": "s__Sulfitobacter noctilucicola", "ani": 79.4841, "matched_fragments": 592, "total_fragments": 1299, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": 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