{ "type": "genome", "identifier": "GCF_000622385.1", "organism": "Sulfitobacter noctilucicola", "title": "Sulfitobacter noctilucicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yonsei University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000622385.1", "bioproject": "PRJNA224116", "biosample": "SAMN02721583", "wgs_master": "JASD00000000.1", "refseq_category": "reference genome", "taxid": "1342301", "species_taxid": "1342301", "organism_name": "Sulfitobacter noctilucicola", "infraspecific_name": "strain=NB-77", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/08", "asm_name": "NB77_draft", "asm_submitter": "Yonsei University", "gbrs_paired_asm": "GCA_000622385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/622/385/GCF_000622385.1_NB77_draft", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4085976", "genome_size_ungapped": "4085976", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000622385.1-RS_2024_04_02", "annotation_date": "2024-04-02", "total_gene_count": "3982", "protein_coding_gene_count": "3903", "non_coding_gene_count": "53", "pubmed_id": "25122614" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-04-08", "dateModified": "2014-04-08", "datePublished": "2014-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfitobacter noctilucicola" ], "sample_taxid": [ "1342301" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Geoje Island" ], "sample_host_location_id": [], "data_size": "1.158 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4085976", "Number of Sequences": "8", "Longest Sequences (bp)": "3387167", "N50 (bp)": "3387167", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.1", "Number of CDSs": "3970", "Average Protein Length": "312.5", "Coding Ratio (%)": "91.1", "Number of rRNAs": "6", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfitobacter noctilucicola", "strain": "strain=NB-77", "accession": "GCA_000622385.1", "taxid": 1342301, "species_taxid": 1342301, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1356, "total_fragments": 1358, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sulfitobacter noctilucicola", "strain": "strain=DSM 101015", "accession": "GCA_014197555.1", "taxid": 1342301, "species_taxid": 1342301, "relation_to_type": "type", "validated": true, "ani": 99.9931, "matched_fragments": 1345, "total_fragments": 1358, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=MM-124", "accession": "GCA_000622325.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 81.2486, "matched_fragments": 648, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=DSM 101063", "accession": "GCA_013407805.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 81.2454, "matched_fragments": 649, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucae", "strain": "strain=NB-68", "accession": "GCA_000622365.1", "taxid": 1342302, "species_taxid": 1342302, "relation_to_type": "type", "validated": true, "ani": 79.5658, "matched_fragments": 580, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter sediminilitoris", "strain": "strain=JBTF-M27", "accession": "GCA_010667575.1", "taxid": 2698830, "species_taxid": 2698830, "relation_to_type": "type", "validated": true, "ani": 78.4078, "matched_fragments": 531, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter maritimus", "strain": "strain=S0837", "accession": "GCA_013346665.1", "taxid": 2741719, "species_taxid": 2741719, "relation_to_type": "type", "validated": true, "ani": 78.1403, "matched_fragments": 320, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter mediterraneus", "strain": "strain=DSM 12244", "accession": "GCA_003054325.1", "taxid": 83219, "species_taxid": 83219, "relation_to_type": "type", "validated": true, "ani": 78.1251, "matched_fragments": 448, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter pontiacus", "strain": "strain=DSM 10014", "accession": "GCA_900106935.1", "taxid": 60137, "species_taxid": 60137, "relation_to_type": "type", "validated": true, "ani": 78.1178, "matched_fragments": 374, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter aestuariivivens", "strain": "strain=TSTF-M16", "accession": "GCA_014763045.1", "taxid": 2766981, "species_taxid": 2766981, "relation_to_type": "type", "validated": true, "ani": 77.5203, "matched_fragments": 362, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia huanghaiensis", "strain": "strain=CY05", "accession": "GCA_009753675.1", "taxid": 2682100, "species_taxid": 2682100, "relation_to_type": "type", "validated": true, "ani": 77.0193, "matched_fragments": 136, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia marina", "strain": "strain=DSW4-44", "accession": "GCA_005771405.1", "taxid": 2578117, "species_taxid": 2578117, "relation_to_type": "type", "validated": true, "ani": 76.8952, "matched_fragments": 148, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola alkalilacus", "strain": "strain=DJC", "accession": "GCA_003443995.1", "taxid": 2305252, "species_taxid": 2305252, "relation_to_type": "type", "validated": true, "ani": 76.497, "matched_fragments": 137, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 76.3186, "matched_fragments": 102, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 76.0831, "matched_fragments": 91, "total_fragments": 1358, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000622385.1", "gtdb_species": "s__Sulfitobacter noctilucicola", "ani": 100.0, "matched_fragments": 1357, "total_fragments": 1358, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000622325.1", "gtdb_species": "s__Sulfitobacter geojensis", "ani": 81.2486, "matched_fragments": 648, "total_fragments": 1358, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.34", "min_intra_species_ani": "96.22", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 35, "status": "-" }, { "accession": "GCF_000622365.1", "gtdb_species": "s__Sulfitobacter noctilucae", "ani": 79.5476, "matched_fragments": 582, "total_fragments": 1358, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017854855.1", "gtdb_species": "s__Sulfitobacter sp017854855", "ani": 78.6156, "matched_fragments": 524, "total_fragments": 1358, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016801775.1", "gtdb_species": "s__Sulfitobacter mediterraneus_A", "ani": 78.5541, "matched_fragments": 471, "total_fragments": 1358, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_003335585.1", "gtdb_species": "s__Sulfitobacter sp003335585", "ani": 78.5084, "matched_fragments": 486, "total_fragments": 1358, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010667575.1", "gtdb_species": "s__Sulfitobacter sediminilitoris", "ani": 78.4078, "matched_fragments": 531, "total_fragments": 1358, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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