{ "type": "genome", "identifier": "GCF_000622405.1", "organism": "Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565", "title": "Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yonsei University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000622405.1", "bioproject": "PRJNA224116", "biosample": "SAMN02721581", "wgs_master": "JASF00000000.1", "refseq_category": "reference genome", "taxid": "1300350", "species_taxid": "421000", "organism_name": "Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565", "infraspecific_name": "strain=KCTC 12864", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/08", "asm_name": "12864_draft", "asm_submitter": "Yonsei University", "gbrs_paired_asm": "GCA_000622405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/622/405/GCF_000622405.1_12864_draft", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3540159", "genome_size_ungapped": "3540159", "gc_percent": "55.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000622405.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3422", "protein_coding_gene_count": "3354", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-04-08", "dateModified": "2014-04-08", "datePublished": "2014-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565" ], "sample_taxid": [ "1300350" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.002 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.52, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3540159", "Number of Sequences": "9", "Longest Sequences (bp)": "3276862", "N50 (bp)": "3276862", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.2", "Number of CDSs": "3392", "Average Protein Length": "314.2", "Coding Ratio (%)": "90.3", "Number of rRNAs": "6", "Number of tRNAs": "41", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfitobacter donghicola", "strain": "strain=KCTC 12864", "accession": "GCA_000622405.1", "taxid": 421000, 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"matched_fragments": 331, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 77.5967, "matched_fragments": 266, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.5233, "matched_fragments": 292, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucae", "strain": "strain=NB-68", "accession": "GCA_000622365.1", "taxid": 1342302, "species_taxid": 1342302, "relation_to_type": "type", "validated": true, "ani": 77.4947, "matched_fragments": 303, 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"status": "below_threshold" }, { "organism_name": "Sulfitobacter aestuariivivens", "strain": "strain=TSTF-M16", "accession": "GCA_014763045.1", "taxid": 2766981, "species_taxid": 2766981, "relation_to_type": "type", "validated": true, "ani": 77.0297, "matched_fragments": 234, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 76.8374, "matched_fragments": 208, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter litoreus", "strain": "strain=ASW11-22", "accession": "GCA_020165855.1", "taxid": 2876714, "species_taxid": 2876714, "relation_to_type": "type", "validated": true, "ani": 76.7655, "matched_fragments": 105, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella sediminis", "strain": "strain=DP3N28-2", "accession": "GCA_019218285.1", "taxid": 2836866, "species_taxid": 2836866, "relation_to_type": "type", "validated": true, "ani": 76.729, "matched_fragments": 161, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodonghicola xiamenensis", "strain": "strain=DSM 18339", "accession": "GCA_000429365.1", "taxid": 337702, "species_taxid": 337702, "relation_to_type": "type", "validated": true, "ani": 76.2209, "matched_fragments": 145, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.52, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000622405.1", "gtdb_species": "s__Sulfitobacter donghicola", "ani": 100.0, "matched_fragments": 1173, "total_fragments": 1175, "gtdb_taxonomy": 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