{
    "type": "genome",
    "identifier": "GCF_000632845.1",
    "organism": "Ehrlichia japonica",
    "title": "Ehrlichia japonica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "IGS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000632845.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02367296",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "391036",
        "species_taxid": "391036",
        "organism_name": "Ehrlichia japonica",
        "infraspecific_name": "strain=HF",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/04/17",
        "asm_name": "ASM63284v1",
        "asm_submitter": "IGS",
        "gbrs_paired_asm": "GCA_000632845.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/632/845/GCF_000632845.1_ASM63284v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1148904",
        "genome_size_ungapped": "1148904",
        "gc_percent": "29.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000632845.1-RS_2025_01_08",
        "annotation_date": "2025-01-08",
        "total_gene_count": "945",
        "protein_coding_gene_count": "892",
        "non_coding_gene_count": "43",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-04-17",
    "dateModified": "2014-04-17",
    "datePublished": "2014-04-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ehrlichia japonica"
        ],
        "sample_taxid": [
            "391036"
        ],
        "sample_host_organism": [
            "Ixodes ovatus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.311 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1148904",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1148904",
        "N50 (bp)": "1148904",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "29.6",
        "Number of CDSs": "900",
        "Average Protein Length": "321.9",
        "Coding Ratio (%)": "75.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ehrlichia muris",
                "strain": "strain=AS145",
                "accession": "GCA_000508225.1",
                "taxid": 35795,
                "species_taxid": 35795,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.0546,
                "matched_fragments": 365,
                "total_fragments": 382,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ehrlichia chaffeensis",
                "strain": "strain=Arkansas",
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                "taxid": 945,
                "species_taxid": 945,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.0299,
                "matched_fragments": 329,
                "total_fragments": 382,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ehrlichia ruminantium",
                "strain": "strain=Welgevonden",
                "accession": "GCA_000026005.1",
                "taxid": 779,
                "species_taxid": 779,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8403,
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                "total_fragments": 382,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ehrlichia ruminantium",
                "strain": "strain=Welgevonden",
                "accession": "GCA_000050425.1",
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                "species_taxid": 779,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7347,
                "matched_fragments": 226,
                "total_fragments": 382,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000632845.1",
                "gtdb_species": "s__Ehrlichia sp000632845",
                "ani": 100.0,
                "matched_fragments": 382,
                "total_fragments": 382,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;g__Ehrlichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000508225.1",
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                "total_fragments": 382,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;g__Ehrlichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.19",
                "min_intra_species_ani": "96.19",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000013145.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;g__Ehrlichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.72",
                "min_intra_species_ani": "99.67",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_000012565.1",
                "gtdb_species": "s__Ehrlichia canis",
                "ani": 82.4788,
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                "total_fragments": 382,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;g__Ehrlichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.82",
                "min_intra_species_ani": "99.82",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000825765.1",
                "gtdb_species": "s__Ehrlichia minasensis",
                "ani": 82.1608,
                "matched_fragments": 284,
                "total_fragments": 382,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;g__Ehrlichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.60",
                "min_intra_species_ani": "99.60",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 1.362,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
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        "genome_size": 1308723.987,
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        "coding_genes": 918.331,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 36.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Ehrlichia",
        "japonica"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}