{ "type": "genome", "identifier": "GCF_000657795.2", "organism": "Bordetella pseudohinzii", "title": "Bordetella pseudohinzii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JCVI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000657795.2", "bioproject": "PRJNA224116", "biosample": "SAMN02263900", "wgs_master": "JHEP00000000.2", "refseq_category": "na", "taxid": "1331258", "species_taxid": "1331258", "organism_name": "Bordetella pseudohinzii", "infraspecific_name": "strain=8-296-03", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/06/24", "asm_name": "gbh03v02", "asm_submitter": "JCVI", "gbrs_paired_asm": "GCA_000657795.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/657/795/GCF_000657795.2_gbh03v02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4538520", "genome_size_ungapped": "4538520", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "48", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-11", "total_gene_count": "4286", "protein_coding_gene_count": "4190", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-06-24", "dateModified": "2015-06-24", "datePublished": "2015-06-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Bordetella pseudohinzii" ], "sample_taxid": [ "1331258" ], "sample_host_organism": [ "mouse" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Missouri" ], "sample_host_location_id": [], "data_size": "1.243 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4538520", "Number of Sequences": "48", "Longest Sequences (bp)": "509204", "N50 (bp)": "256610", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.6", "Number of CDSs": "4211", "Average Protein Length": "327.2", "Coding Ratio (%)": "91.1", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bordetella pseudohinzii", "strain": "strain=8-296-03", "accession": "GCA_000657795.2", "taxid": 1331258, "species_taxid": 1331258, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1487, "total_fragments": 1489, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bordetella hinzii", "strain": "strain=NCTC13199", "accession": "GCA_900637615.1", "taxid": 103855, "species_taxid": 103855, "relation_to_type": "type", "validated": true, "ani": 93.2508, "matched_fragments": 1248, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella hinzii", "strain": "strain=LMG 13501", "accession": "GCA_001548475.1", "taxid": 103855, "species_taxid": 103855, "relation_to_type": "type", "validated": true, "ani": 93.197, "matched_fragments": 1214, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella holmesii", "strain": "strain=NCTC12912", "accession": "GCA_900445775.1", "taxid": 35814, "species_taxid": 35814, "relation_to_type": "type", "validated": true, "ani": 83.5426, "matched_fragments": 893, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella holmesii", "strain": "strain=FDAARGOS_1539", "accession": "GCA_020735985.1", "taxid": 35814, "species_taxid": 35814, "relation_to_type": "type", "validated": true, "ani": 83.484, "matched_fragments": 898, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella trematum", "strain": "strain=NCTC12995", "accession": "GCA_900445945.1", "taxid": 123899, "species_taxid": 123899, "relation_to_type": "type", "validated": true, "ani": 82.974, "matched_fragments": 827, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella trematum", "strain": "strain=NCTC12995", "accession": "GCA_900078335.1", "taxid": 123899, "species_taxid": 123899, "relation_to_type": "type", "validated": true, "ani": 82.9097, "matched_fragments": 818, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella pertussis", "strain": "strain=FDAARGOS_1543", "accession": "GCA_020736265.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 82.8248, "matched_fragments": 791, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 82.8128, "matched_fragments": 803, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella pertussis", "strain": "strain=18323", "accession": "GCA_000306945.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 82.7982, "matched_fragments": 779, "total_fragments": 1489, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insuavis", "strain": "strain=LMG 26845", "accession": "GCA_902859645.1", "taxid": 1287735, "species_taxid": 1287735, 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