{ "type": "genome", "identifier": "GCF_000685015.1", "organism": "Paraburkholderia bannensis NBRC 103871", "title": "Paraburkholderia bannensis NBRC 103871", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000685015.1", "bioproject": "PRJNA224116", "biosample": "SAMD00000368", "wgs_master": "BAYA00000000.1", "refseq_category": "reference genome", "taxid": "1218075", "species_taxid": "765414", "organism_name": "Paraburkholderia bannensis NBRC 103871", "infraspecific_name": "strain=NBRC 103871", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/28", "asm_name": "ASM68501v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000685015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/685/015/GCF_000685015.1_ASM68501v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8648774", "genome_size_ungapped": "8648774", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "102", "contig_count": "102", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000685015.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "7791", "protein_coding_gene_count": "7603", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-04-28", "dateModified": "2014-04-28", "datePublished": "2014-04-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia bannensis NBRC 103871" ], "sample_taxid": [ "1218075" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand:Nakhon Nayok" ], "sample_host_location_id": [], "data_size": "2.388 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8648774", "Number of Sequences": "102", "Longest Sequences (bp)": "611730", "N50 (bp)": "258097", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.0", "Number of CDSs": "7659", "Average Protein Length": "321.5", "Coding Ratio (%)": "85.4", "Number of rRNAs": "2", "Number of tRNAs": "62", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia bannensis", "strain": "strain=NBRC 103871", "accession": "GCA_000685015.1", "taxid": 765414, "species_taxid": 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"total_fragments": 2831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia pallida", "strain": "strain=7MH5", "accession": "GCA_004524855.1", "taxid": 2547399, "species_taxid": 2547399, "relation_to_type": "type", "validated": true, "ani": 85.3665, "matched_fragments": 1736, "total_fragments": 2831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia acidisoli", "strain": "strain=DHF22", "accession": "GCA_009789675.1", "taxid": 2571748, "species_taxid": 2571748, "relation_to_type": "type", "validated": true, "ani": 84.6427, "matched_fragments": 1577, "total_fragments": 2831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia ferrariae", "strain": "strain=NBRC 106233", "accession": "GCA_000685035.1", "taxid": 386056, "species_taxid": 386056, "relation_to_type": "type", "validated": true, "ani": 84.195, "matched_fragments": 1436, "total_fragments": 2831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia gardini", "strain": "strain=LMG 32171", "accession": "GCA_907164575.1", "taxid": 2823469, "species_taxid": 2823469, "relation_to_type": "type", "validated": true, "ani": 81.1707, "matched_fragments": 984, "total_fragments": 2831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 81.089, "matched_fragments": 1151, "total_fragments": 2831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia azotifigens", "strain": "strain=NF 2-5-3", "accession": "GCA_007995085.1", "taxid": 2057004, "species_taxid": 2057004, "relation_to_type": "type", "validated": true, "ani": 81.0616, "matched_fragments": 1283, "total_fragments": 2831, "ani_threshold": 95, "status": "below_threshold" } ], 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"mean_intra_species_af": "0.93", "min_intra_species_af": "0.85", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_000685075.1", "gtdb_species": "s__Paraburkholderia oxyphila", "ani": 85.5595, "matched_fragments": 1658, "total_fragments": 2831, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.32", "min_intra_species_ani": "95.32", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.74", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003268775.1", "gtdb_species": "s__Paraburkholderia unamae", "ani": 84.8369, "matched_fragments": 1651, "total_fragments": 2831, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.206, "cell_length": 0.138, "doubling_h": 0.0, "growth_tmp": 29.45, "optimum_tmp": 30.0, "optimum_ph": 6.11, "genome_size": 8648774.0, "gc_content": 64.0, "coding_genes": 7196.441, "rRNA16S_genes": 5.571, "tRNA_genes": 61.73, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paraburkholderia", "bannensis", "NBRC", "103871" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }