{ "type": "genome", "identifier": "GCF_000685865.1", "organism": "Exiguobacterium antarcticum DSM 14480", "title": "Exiguobacterium antarcticum DSM 14480", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000685865.1", "bioproject": "PRJNA224116", "biosample": "SAMN02743349", "wgs_master": "JMKS00000000.1", "refseq_category": "reference genome", "taxid": "1397700", "species_taxid": "132920", "organism_name": "Exiguobacterium antarcticum DSM 14480", "infraspecific_name": "strain=DSM 14480", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/05/08", "asm_name": "ASM68586v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000685865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/685/865/GCF_000685865.1_ASM68586v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3219480", "genome_size_ungapped": "3219480", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000685865.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3357", "protein_coding_gene_count": "3219", "non_coding_gene_count": "102", "pubmed_id": "25323723" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-05-08", "dateModified": "2014-05-08", "datePublished": "2014-05-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Exiguobacterium antarcticum DSM 14480" ], "sample_taxid": [ "1397700" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "0.909 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3219480", "Number of Sequences": "7", "Longest Sequences (bp)": "1885077", "N50 (bp)": "1885077", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.1", "Number of CDSs": "3283", "Average Protein Length": "286.6", "Coding Ratio (%)": "87.7", "Number of rRNAs": "29", "Number of tRNAs": "70", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Exiguobacterium undae", "strain": "strain=DSM 14481", "accession": "GCA_000620805.1", "taxid": 169177, "species_taxid": 169177, 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"status": "below_threshold" }, { "organism_name": "Exiguobacterium chiriqhucha", "strain": "strain=RW-2", "accession": "GCA_000416965.1", "taxid": 1385984, "species_taxid": 1385984, "relation_to_type": "type", "validated": true, "ani": 77.5506, "matched_fragments": 114, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000685865.1", "gtdb_species": "s__Exiguobacterium_A antarcticum", "ani": 100.0, "matched_fragments": 1067, "total_fragments": 1069, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_001870785.1", 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