{
    "type": "genome",
    "identifier": "GCF_000686605.1",
    "organism": "Streptococcus sobrinus DSM 20742 = ATCC 33478",
    "title": "Streptococcus sobrinus DSM 20742 = ATCC 33478",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000686605.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02743354",
        "wgs_master": "JMLC00000000.1",
        "refseq_category": "na",
        "taxid": "1123317",
        "species_taxid": "1310",
        "organism_name": "Streptococcus sobrinus DSM 20742 = ATCC 33478",
        "infraspecific_name": "strain=DSM 20742",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/05/08",
        "asm_name": "ASM68660v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000686605.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/686/605/GCF_000686605.1_ASM68660v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2138493",
        "genome_size_ungapped": "2137939",
        "gc_percent": "43.500000",
        "replicon_count": "0",
        "scaffold_count": "54",
        "contig_count": "55",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000686605.1-RS_2024_05_15",
        "annotation_date": "2024-05-15",
        "total_gene_count": "2111",
        "protein_coding_gene_count": "1965",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-05-08",
    "dateModified": "2014-05-08",
    "datePublished": "2014-05-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptococcus sobrinus DSM 20742 = ATCC 33478"
        ],
        "sample_taxid": [
            "1123317"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.611 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2138493",
        "Number of Sequences": "54",
        "Longest Sequences (bp)": "213871",
        "N50 (bp)": "65581",
        "Gap Ratio (%)": "0.025906",
        "GCcontent (%)": "43.4",
        "Number of CDSs": "2007",
        "Average Protein Length": "291.0",
        "Coding Ratio (%)": "81.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Streptococcus sobrinus",
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                "accession": "GCA_000686605.1",
                "taxid": 1310,
                "species_taxid": 1310,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 679,
                "total_fragments": 685,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus sobrinus",
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                "accession": "GCA_900475395.1",
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                "species_taxid": 1310,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9949,
                "matched_fragments": 684,
                "total_fragments": 685,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus sobrinus",
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                "accession": "GCA_003172995.1",
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                "relation_to_type": "type",
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                "ani": 99.9946,
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            },
            {
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                "validated": true,
                "ani": 99.9922,
                "matched_fragments": 674,
                "total_fragments": 685,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus downei",
                "strain": "strain=NCTC 11391",
                "accession": "GCA_900459175.1",
                "taxid": 1317,
                "species_taxid": 1317,
                "relation_to_type": "type",
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                "ani": 86.8895,
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                "total_fragments": 685,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus criceti",
                "strain": "strain=HS-6",
                "accession": "GCA_000187975.3",
                "taxid": 1333,
                "species_taxid": 1333,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3175,
                "matched_fragments": 403,
                "total_fragments": 685,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus constellatus subsp. constellatus",
                "strain": "strain=CCUG 24889",
                "accession": "GCA_023167545.1",
                "taxid": 184246,
                "species_taxid": 76860,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6983,
                "matched_fragments": 55,
                "total_fragments": 685,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus ruminantium",
                "strain": "strain=GUT187T",
                "accession": "GCA_003609975.1",
                "taxid": 1917441,
                "species_taxid": 1917441,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 685,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "completeness": 100.0,
            "contamination": 0.0,
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                "accession": "GCF_000686605.1",
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                "matched_fragments": 679,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
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            },
            {
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                "num_clustered_genomes": 6,
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            },
            {
                "accession": "GCF_000187975.2",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
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            {
                "accession": "GCF_011038795.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
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            },
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
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    "_genome_taxon": [
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        "DSM",
        "20742",
        "=",
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        "33478"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}