{
    "type": "genome",
    "identifier": "GCF_000686905.1",
    "organism": "Marinospirillum insulare DSM 21763",
    "title": "Marinospirillum insulare DSM 21763",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000686905.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02743374",
        "wgs_master": "JMLW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1122211",
        "species_taxid": "217169",
        "organism_name": "Marinospirillum insulare DSM 21763",
        "infraspecific_name": "strain=DSM 21763",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/05/08",
        "asm_name": "ASM68690v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000686905.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/686/905/GCF_000686905.1_ASM68690v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2920434",
        "genome_size_ungapped": "2917354",
        "gc_percent": "43.000000",
        "replicon_count": "0",
        "scaffold_count": "70",
        "contig_count": "72",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000686905.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "2877",
        "protein_coding_gene_count": "2784",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-05-08",
    "dateModified": "2014-05-08",
    "datePublished": "2014-05-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Marinospirillum insulare DSM 21763"
        ],
        "sample_taxid": [
            "1122211"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.830 MB",
        "sample_ph_range": {
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            "max": 65100.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2920434",
        "Number of Sequences": "70",
        "Longest Sequences (bp)": "307422",
        "N50 (bp)": "86031",
        "Gap Ratio (%)": "0.105464",
        "GCcontent (%)": "43.1",
        "Number of CDSs": "2743",
        "Average Protein Length": "322.5",
        "Coding Ratio (%)": "90.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Marinospirillum insulare",
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                "accession": "GCA_000686905.1",
                "taxid": 217169,
                "species_taxid": 217169,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Marinospirillum minutulum",
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                "accession": "GCA_000422325.1",
                "taxid": 64974,
                "species_taxid": 64974,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 699,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinospirillum perlucidum",
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                "species_taxid": 1982602,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinospirillum celere",
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                "species_taxid": 1122252,
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                "matched_fragments": 103,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_000686905.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            {
                "accession": "GCF_000422325.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
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                "num_clustered_genomes": 1,
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            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007119985.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": -1.0,
        "cell_length": 0.397,
        "doubling_h": null,
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        "gram_stain": 0.0,
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        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Marinospirillum",
        "insulare",
        "DSM",
        "21763"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}