{ "type": "genome", "identifier": "GCF_000687535.1", "organism": "Helicobacter rodentium ATCC 700285", "title": "Helicobacter rodentium ATCC 700285", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000687535.1", "bioproject": "PRJNA224116", "biosample": "SAMN02743884", "wgs_master": "JHWC00000000.1", "refseq_category": "reference genome", "taxid": "1449345", "species_taxid": "59617", "organism_name": "Helicobacter rodentium ATCC 700285", "infraspecific_name": "strain=ATCC 700285", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/04/08", "asm_name": "ASM68753v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000687535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/687/535/GCF_000687535.1_ASM68753v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1810652", "genome_size_ungapped": "1810652", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000687535.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "1972", "protein_coding_gene_count": "1910", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-04-08", "dateModified": "2014-04-08", "datePublished": "2014-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Helicobacter rodentium ATCC 700285" ], "sample_taxid": [ "1449345" ], "sample_host_organism": [], 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"matched_fragments": 169, "total_fragments": 592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter burdigaliensis", "strain": "strain=CNRCH 2005/566H", "accession": "GCA_003670295.1", "taxid": 2315334, "species_taxid": 2315334, "relation_to_type": "type", "validated": true, "ani": 77.6457, "matched_fragments": 155, "total_fragments": 592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter canadensis", "strain": "strain=MIT 98-5491", "accession": "GCA_000155455.1", "taxid": 123841, "species_taxid": 123841, "relation_to_type": "type", "validated": true, "ani": 77.5955, "matched_fragments": 163, "total_fragments": 592, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter canadensis", "strain": "strain=MIT 98-5491", "accession": "GCA_000162575.1", "taxid": 123841, "species_taxid": 123841, "relation_to_type": "type", "validated": true, "ani": 77.5252, "matched_fragments": 167, 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"bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 1.0 }, "_genome_taxon": [ "Helicobacter", "rodentium", "ATCC", "700285" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }